FC868918

Overview
NameFC868918
Unique NameFC868918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_BURP1 (50S ribosomal protein L15 OS=Burkholderia pseudomallei (strain 1710b) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 46/116 (39.66%), Postives = 61/116 (52.59%), Query Frame = 2
Query:  287 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYV-PVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKL 631
            LNNL P  G+          I +G G + G G +GQKSRSG   + GFEGGQMPL RR+PK      G  +   ++V  V L D+E    L  DE+ L  LK+ GL+    +  K+
Sbjct:    3 LNNLKPAEGAKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRRLPK-----RGFTSLTKEFVGEVRLGDLEK---LPVDEIDLLALKQAGLVGELIKSAKI 110          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_BURP0 (50S ribosomal protein L15 OS=Burkholderia pseudomallei (strain 1106a) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 46/116 (39.66%), Postives = 61/116 (52.59%), Query Frame = 2
Query:  287 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYV-PVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKL 631
            LNNL P  G+          I +G G + G G +GQKSRSG   + GFEGGQMPL RR+PK      G  +   ++V  V L D+E    L  DE+ L  LK+ GL+    +  K+
Sbjct:    3 LNNLKPAEGAKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRRLPK-----RGFTSLTKEFVGEVRLGDLEK---LPVDEIDLLALKQAGLVGELIKSAKI 110          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_BURMS (50S ribosomal protein L15 OS=Burkholderia mallei (strain SAVP1) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 46/116 (39.66%), Postives = 61/116 (52.59%), Query Frame = 2
Query:  287 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYV-PVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKL 631
            LNNL P  G+          I +G G + G G +GQKSRSG   + GFEGGQMPL RR+PK      G  +   ++V  V L D+E    L  DE+ L  LK+ GL+    +  K+
Sbjct:    3 LNNLKPAEGAKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRRLPK-----RGFTSLTKEFVGEVRLGDLEK---LPVDEIDLLALKQAGLVGELIKSAKI 110          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_BURMA (50S ribosomal protein L15 OS=Burkholderia mallei GN=rplO PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 46/116 (39.66%), Postives = 61/116 (52.59%), Query Frame = 2
Query:  287 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYV-PVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKL 631
            LNNL P  G+          I +G G + G G +GQKSRSG   + GFEGGQMPL RR+PK      G  +   ++V  V L D+E    L  DE+ L  LK+ GL+    +  K+
Sbjct:    3 LNNLKPAEGAKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRRLPK-----RGFTSLTKEFVGEVRLGDLEK---LPVDEIDLLALKQAGLVGELIKSAKI 110          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_BURM9 (50S ribosomal protein L15 OS=Burkholderia mallei (strain NCTC 10229) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 46/116 (39.66%), Postives = 61/116 (52.59%), Query Frame = 2
Query:  287 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYV-PVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKL 631
            LNNL P  G+          I +G G + G G +GQKSRSG   + GFEGGQMPL RR+PK      G  +   ++V  V L D+E    L  DE+ L  LK+ GL+    +  K+
Sbjct:    3 LNNLKPAEGAKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRRLPK-----RGFTSLTKEFVGEVRLGDLEK---LPVDEIDLLALKQAGLVGELIKSAKI 110          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_BURM7 (50S ribosomal protein L15 OS=Burkholderia mallei (strain NCTC 10247) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 46/116 (39.66%), Postives = 61/116 (52.59%), Query Frame = 2
Query:  287 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYV-PVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKL 631
            LNNL P  G+          I +G G + G G +GQKSRSG   + GFEGGQMPL RR+PK      G  +   ++V  V L D+E    L  DE+ L  LK+ GL+    +  K+
Sbjct:    3 LNNLKPAEGAKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRRLPK-----RGFTSLTKEFVGEVRLGDLEK---LPVDEIDLLALKQAGLVGELIKSAKI 110          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_ALKMQ (50S ribosomal protein L15 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 48/124 (38.71%), Postives = 63/124 (50.81%), Query Frame = 2
Query:  284 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDG 655
            +L+ L P  G+           A G G + G G  GQ SRSG GVR GFEGGQMPL RR+PK     G  +     Y  VN+  +    F +G  ++ E LK+ G+I    +  K   KILG+G
Sbjct:    2 KLHELKPAKGAVKEVKRKGRGRATGNGKTAGRGHNGQNSRSGGGVRIGFEGGQMPLARRLPK----RGFTNIFAKVYNEVNVDVLNK--FEDGTTITPEFLKEMGVIK---QIEKNGVKILGNG 116          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_AERHH (50S ribosomal protein L15 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 46/108 (42.59%), Postives = 56/108 (51.85%), Query Frame = 2
Query:  284 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPG-VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 604
            RLN L P  GS          I +G G + G G++GQ SRSG G VR GFEGGQMPL  R+PK     G           V L +I     +EGD V + TLK+ G+I
Sbjct:    2 RLNTLSPAAGSKRVKHRPGRGIGSGLGKTGGRGVKGQTSRSGGGKVRNGFEGGQMPLKIRLPKF----GFFSRKSLVSAEVRLNEI---ALVEGDVVDVSTLKQAGVI 102          
The following BLAST results are available for this feature:
BLAST of FC868918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
RL15_BURP18.376e-1139.6650S ribosomal protein L15 OS=Burkholderia pseudoma... [more]
RL15_BURP08.376e-1139.6650S ribosomal protein L15 OS=Burkholderia pseudoma... [more]
RL15_BURMS8.376e-1139.6650S ribosomal protein L15 OS=Burkholderia mallei (... [more]
RL15_BURMA8.376e-1139.6650S ribosomal protein L15 OS=Burkholderia mallei G... [more]
RL15_BURM98.376e-1139.6650S ribosomal protein L15 OS=Burkholderia mallei (... [more]
RL15_BURM78.376e-1139.6650S ribosomal protein L15 OS=Burkholderia mallei (... [more]
RL15_ALKMQ8.376e-1138.7150S ribosomal protein L15 OS=Alkaliphilus metallir... [more]
RL15_AERHH8.376e-1142.5950S ribosomal protein L15 OS=Aeromonas hydrophila ... [more]

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Properties
Property NameValue
Genbank descriptionC31006E05EF AbioticL1 Citrus clementina cDNA clone C31006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868918 ID=FC868918; Name=FC868918; organism=Citrus clementina; type=EST; length=698bp
AAACAACAAATAATTCCTGAAGCCTGAAGCATAAAATTTCATCATCGCAA
TCATCTCCATCATGGCATCTCTTCTCTCAGTCACTGCAAATTCACTAAGC
TTTCCATCAACTCCATTCAAGGGCAATGTCAAAACCCTAATGCCAAAACC
CCCATCAAGCCTTTGCGTCCCTCTCAAAGTCCAACAAAGAAATAAACCAC
CCCAGCTCACTGTCTTAAACCAAGCTGCTTCCGCTTCTGCTTCAGCAACT
GTTGGTTCGGGTCCCGTTACGAATGTACGGTTCCGGTTAAATAACCTGGG
CCCACAACCGGGGTCGAGAAAGAGAGGGAAGAGAAAGGGGAGAGGAATAG
CTGCTGGTCAAGGTAACAGCTGTGGGTTTGGAATGAGAGGTCAGAAATCG
AGGTCTGGTCCTGGCGTTAGAAAGGGTTTTGAAGGTGGTCAAATGCCTCT
TTATCGTCGAATTCCTAAGCTCCGTGGGATTGCCGGAGGTATGCATGCTG
GGTTACCTAAGTATGTCCCTGTTAACTTGAAAGACATAGAAGCAGCTGGT
TTTCTAGAGGGGGATGAAGTCTCACTAGAGACTTTGAAGAAGAAGGGCTT
GATCAATCCCTCAGGAAGAGAAAGGAAACTGCCTTTTAAGATTCTTGGTG
ATGGAGAATAAGCAAGAAGCTGAACTTCAGGCTCGTGCCTCTCTACAT
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