FC868922

Overview
NameFC868922
Unique NameFC868922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_SYNE7 (Ycf48-like protein OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_1178 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.267e-27
Identity = 60/128 (46.88%), Postives = 86/128 (67.19%), Query Frame = 2
Query:  305 SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIY 688
            S W+ + +  +    +LDIAF  +   HG+L+GT   L ET DGG++W+ R++    + D  YR NSISFKG EGW+VG+P+++LHT+D G++W RIPLS +LPG  + + A G+  AEM TD  AIY
Sbjct:   40 SPWQVIDLGTEK--TILDIAFTSNK-QHGWLVGTDLALYETLDGGQSWSERAL----DLDETYRLNSISFKGDEGWVVGQPSLMLHTTDGGKNWLRIPLSEKLPGSPLLVTALGKGEAEMATDVAAIY 160          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_PROMA (Ycf48-like protein OS=Prochlorococcus marinus GN=Pro_0327 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26
Identity = 63/133 (47.37%), Postives = 82/133 (61.65%), Query Frame = 2
Query:  296 EALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            ++ S WE + +  D     LDIAFV D  NHGFL+G  + +LET DGG TW  R +    EE  N+R  SI FK  EGWIVG+P ++LH+ DAG++W R+ L SQLPG+   I      SAE+ T  GA+Y T
Sbjct:   33 QSSSPWEEIELANDDNP--LDIAFVDD--NHGFLVGANRLILETTDGGSTWEERDLDIPAEE--NFRLMSIDFKEDEGWIVGQPNLVLHSEDAGKNWTRLSLGSQLPGNPYLITTLDTSSAELATTAGAVYRT 159          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_SYNPX (Ycf48-like protein OS=Synechococcus sp. (strain WH8102) GN=SYNW0205 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 65/162 (40.12%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  209 QFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            +FVS    L L + L  +            + S W+ + +  +     LD+AF   D  HG+L+G+ + + ET DGG TW  RS+   EEE  N+R  SI F G EGWI G+P +L+HTSD G++W R+ L ++LPG+   I A G  SAEM T+ GA+Y T
Sbjct:    3 RFVSSAINLLLVLVLGVSLSGCVTTRLPVASTSPWQALNLDTEANP--LDVAFT--DSRHGYLVGSNRMIRETNDGGATWNDRSLDLPEEE--NFRLISIDFNGDEGWIAGQPGLLMHTSDGGQNWTRLFLDTKLPGEPYLITALGSHSAEMATNVGAVYET 158          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_SYNJB (Ycf48-like protein OS=Synechococcus sp. GN=CYB_2153 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 61/128 (47.66%), Postives = 83/128 (64.84%), Query Frame = 2
Query:  311 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            W++V +P     +LLDIAF     +HG+L+G + TLLE++DGG  W  R +P  E E +     SISF G EGW+ G+P ILLHT + G  W  I L++QLPG+ + I+A G  +AEMVT+ GAIY T
Sbjct:   34 WQQVEVPTQN--ILLDIAFTGTTPSHGWLVGDKATLLESRDGGLHWQVRELPGLEPEAY---LASISFAGAEGWVAGQPKILLHTLNEGSDWTSIRLNNQLPGEPLLIQALGPGAAEMVTNVGAIYRT 156          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_SYNP6 (Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc0372_d PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 59/128 (46.09%), Postives = 85/128 (66.41%), Query Frame = 2
Query:  305 SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIY 688
            S W+ + +  +    +LDIAF  +   HG+L+GT   L ET DG ++W+ R++    + D  YR NSISFKG EGW+VG+P+++LHT+D G++W RIPLS +LPG  + + A G+  AEM TD  AIY
Sbjct:   40 SPWQVIDLGTEK--TILDIAFTSNK-QHGWLVGTDLALYETLDGEQSWSERAL----DLDETYRLNSISFKGDEGWVVGQPSLMLHTTDGGKNWLRIPLSEKLPGSPLLVTALGKGEAEMATDVAAIY 160          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_SYNR3 (Ycf48-like protein OS=Synechococcus sp. (strain RCC307) GN=SynRCC307_0211 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26
Identity = 66/154 (42.86%), Postives = 91/154 (59.09%), Query Frame = 2
Query:  233 LSLSISLAATTGLYEQPAKS--EEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIY 688
            LSL + +  T GL      S    A S W    + ++     LD+AF  +  +HGFL+G+ + ++ET DGG+TW  R I    +E  N+R  SI F G EGWI G+P +LLH+ DAG+SW R+ L ++LPGD   I A G K AE+ T+ GAIY
Sbjct:    9 LSLLLCVGLTFGLGGCVTTSLPMAAASPWNSQKLGIESNP--LDVAFTNE--SHGFLVGSNRLVMETSDGGETWEEREIDLPADE--NFRLISIDFNGDEGWIAGQPGLLLHSDDAGQSWSRLLLDTKLPGDPYLITALGSKKAELATNVGAIY 156          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_PROMM (Ycf48-like protein OS=Prochlorococcus marinus (strain MIT 9313) GN=PMT_1895 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 54/114 (47.37%), Postives = 78/114 (68.42%), Query Frame = 2
Query:  353 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            LDI+F   D NHGF++GT + ++E+ DGG +W  RS+    EED N+R  SI F G EGWI G+P +++H++DAG++W R+ L ++LPGD   I   G  +AE+ T+ GAIY T
Sbjct:   49 LDISF--SDANHGFVVGTNRLIMESNDGGVSWKKRSLDL--EEDENFRLISIDFNGNEGWIAGQPGLVMHSTDAGKNWSRLKLENKLPGDPYLITNLGPNNAELATNAGAIYRT 158          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_SYNS9 (Ycf48-like protein OS=Synechococcus sp. (strain CC9902) GN=Syncc9902_0228 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.550e-24
Identity = 52/114 (45.61%), Postives = 79/114 (69.30%), Query Frame = 2
Query:  353 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            LD++F   D +HGFL+G+ + + ET DGG  W  RS+   +EE  N+R  SI F+G+EGWI G+P +L+H++D G++W R+ L ++LPG+   I A G+ SAE+ T+ GA+Y T
Sbjct:   49 LDVSFT--DPSHGFLVGSNRMIRETDDGGAHWNDRSLDLPDEE--NFRLISIDFEGQEGWIAGQPGLLMHSTDGGQNWTRLFLDTKLPGEPYLITALGKSSAELATNVGAVYKT 158          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_SYNSC (Ycf48-like protein OS=Synechococcus sp. (strain CC9605) GN=Syncc9605_0201 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.906e-23
Identity = 61/154 (39.61%), Postives = 90/154 (58.44%), Query Frame = 2
Query:  233 LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            L L ISL+     +   A +    S W+ +   +D     LD+AF   D +HG+L+G+ + + ET DGG  W  RS+   +EE  N+R  SI F G EGWI G+P +L+H+ D G++W R+ L ++LPG+   I A G  SAE+ T+ GA+Y T
Sbjct:   15 LVLGISLSGCVTTHVPTATT----SPWQAM--DLDTQANPLDVAFT--DSSHGYLVGSNRMIRETNDGGAHWNERSLDLPDEE--NFRLISIDFSGDEGWIAGQPGLLMHSDDGGQNWTRLFLDTKLPGEPYLITALGSHSAELATNVGAVYET 158          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_PROMT (Ycf48-like protein OS=Prochlorococcus marinus (strain NATL2A) GN=PMN2A_1662 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.545e-23
Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = 2
Query:  353 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            LD+ FV D   +GFL+GT + +LET DGG TW  R++    E   N+R  S+ FKG+EGWI G+P ++LHT+D G++W R+ L ++LPGD   I       AE+ T  GAIY T
Sbjct:   49 LDVDFVDD--KNGFLVGTNRLILETNDGGITWKERNLDIPSEG--NFRLISVDFKGQEGWIAGQPGLILHTTDGGKNWTRLDLGNKLPGDPYLITTIDTDIAELATTAGAIYKT 158          
The following BLAST results are available for this feature:
BLAST of FC868922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
YC48L_SYNE78.267e-2746.88Ycf48-like protein OS=Synechococcus elongatus (str... [more]
YC48L_PROMA1.410e-2647.37Ycf48-like protein OS=Prochlorococcus marinus GN=P... [more]
YC48L_SYNPX3.142e-2640.12Ycf48-like protein OS=Synechococcus sp. (strain WH... [more]
YC48L_SYNJB3.142e-2647.66Ycf48-like protein OS=Synechococcus sp. GN=CYB_215... [more]
YC48L_SYNP66.999e-2646.09Ycf48-like protein OS=Synechococcus sp. (strain AT... [more]
YC48L_SYNR39.140e-2642.86Ycf48-like protein OS=Synechococcus sp. (strain RC... [more]
YC48L_PROMM4.536e-2547.37Ycf48-like protein OS=Prochlorococcus marinus (str... [more]
YC48L_SYNS96.550e-2445.61Ycf48-like protein OS=Synechococcus sp. (strain CC... [more]
YC48L_SYNSC1.906e-2339.61Ycf48-like protein OS=Synechococcus sp. (strain CC... [more]
YC48L_PROMT5.545e-2346.49Ycf48-like protein OS=Prochlorococcus marinus (str... [more]

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Properties
Property NameValue
Genbank descriptionC31006E09EF AbioticL1 Citrus clementina cDNA clone C31006E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868922 ID=FC868922; Name=FC868922; organism=Citrus clementina; type=EST; length=694bp
GAGAACAAAAGGGAGTATCGCAATGGGCAGCAGTCTACGACCGAGCGAAC
CGATAATGTTAGTAAAGCCATCGTTGAGCTCACTTTTCGCTCCTCGCCTT
AGCCGTGCAAACGCACAGGCACAGCAGCCTCGTTTCATTTCTACTTCTAG
AGCTTGTTCTCTTCCCAGTAGTGATTCTTCTTCGTCTTCATCGTCTCTCA
GTCGCAGACAATTCGTATCACAAACAGCCACGTTATCGCTATCAATCTCC
CTAGCCGCAACTACTGGTCTCTACGAACAGCCCGCAAAGTCAGAAGAAGC
ACTCTCCGCGTGGGAGAGAGTGTACATTCCTGTTGATCCCGGTGTTGTGC
TCCTCGACATCGCTTTCGTCCCCGATGACTTGAACCACGGCTTTCTCCTG
GGAACCAGGCAAACTCTCTTGGAGACCAAAGATGGTGGTAAAACTTGGGC
TCCACGTTCCATACCATCAGCTGAGGAGGAAGATTTCAACTATAGATTTA
ATTCCATTAGTTTCAAGGGCAAGGAAGGATGGATTGTTGGCAAACCTGCA
ATTTTGTTGCATACTTCTGATGCTGGAGAAAGCTGGGAAAGGATACCATT
AAGTTCTCAACTTCCTGGAGATATGGTTTACATAAAGGCCACCGGAAGAA
AGAGTGCTGAGATGGTGACCGATGAAGGTGCAATATATATTACA
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