FC868922

Overview
NameFC868922
Unique NameFC868922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_PROMP (Ycf48-like protein OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=PMM0296 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.459e-23
Identity = 61/157 (38.85%), Postives = 90/157 (57.32%), Query Frame = 2
Query:  224 TATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            T TL   +S  ++TG+     K  E+ S WE +          LDI F+  D NHGFL+G+ + ++E+ DGGK+W  RS+  A EE  N+R   I FKG EGW++G+P++++HT D G++W R+ L  +LPG    +       AE+ T   AIY T
Sbjct:   14 TFTLCFVLSSCSSTGV-----KMSES-SPWETIQFEDQSNA--LDIDFI--DNNHGFLVGSNRLIMESNDGGKSWEKRSLDIAAEE--NFRLLDIDFKGSEGWLIGQPSLVMHTIDEGKNWTRLSL-GKLPGQPFLVSTVDDGVAELATTSAAIYTT 157          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_PROM9 (Ycf48-like protein OS=Prochlorococcus marinus (strain MIT 9312) GN=PMT9312_0298 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.613e-22
Identity = 56/163 (34.36%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  206 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            ++ ++    L LSI L                 S W+ +          LD+ F+  D N+GFL+G+ + ++E+ DGG+TW  R++    EE  N+R   I FKG+EGW++G+P++++HT DAG++W R+ L ++LPG    I       AE+ T  GAIY T
Sbjct:    2 KKIITSFPNLLLSILLCFVLSSCSSTGVKMSDSSPWKTIQFQDQANA--LDVDFI--DNNNGFLVGSNRLIMESNDGGETWEKRNLDLPSEE--NFRLIDIDFKGQEGWLIGQPSLVMHTLDAGKNWTRLSLGNKLPGQPYLITTVDDGVAELATTAGAIYQT 158          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_GLOVI (Ycf48-like protein OS=Gloeobacter violaceus GN=glr0855 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 58/154 (37.66%), Postives = 83/154 (53.90%), Query Frame = 2
Query:  233 LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            L L + L    G    P + +E    W+ +   +     LLDIAFV D   +G+ +G+R TLL T DGG++W   ++P   + D   RF S+SF GK GWI G+P  LL T + G SW  I L  +LPG  + + A G  +AE+V + G +  T
Sbjct:    7 LGLGLLLLVLAGCGAPPLERDE----WKVIPTGLSDKADLLDIAFVDD--KNGWAVGSRSTLLRTADGGESWT--AVPVKLDSDS--RFLSVSFDGKNGWIGGEPKRLLRTVNGGASWTSITLDQRLPGSPLKVYALGADTAEVVLNSGLVIKT 150          
The following BLAST results are available for this feature:
BLAST of FC868922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
YC48L_PROMP9.459e-2338.85Ycf48-like protein OS=Prochlorococcus marinus subs... [more]
YC48L_PROM91.613e-2234.36Ycf48-like protein OS=Prochlorococcus marinus (str... [more]
YC48L_GLOVI6.345e-1937.66Ycf48-like protein OS=Gloeobacter violaceus GN=glr... [more]

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Properties
Property NameValue
Genbank descriptionC31006E09EF AbioticL1 Citrus clementina cDNA clone C31006E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868922 ID=FC868922; Name=FC868922; organism=Citrus clementina; type=EST; length=694bp
GAGAACAAAAGGGAGTATCGCAATGGGCAGCAGTCTACGACCGAGCGAAC
CGATAATGTTAGTAAAGCCATCGTTGAGCTCACTTTTCGCTCCTCGCCTT
AGCCGTGCAAACGCACAGGCACAGCAGCCTCGTTTCATTTCTACTTCTAG
AGCTTGTTCTCTTCCCAGTAGTGATTCTTCTTCGTCTTCATCGTCTCTCA
GTCGCAGACAATTCGTATCACAAACAGCCACGTTATCGCTATCAATCTCC
CTAGCCGCAACTACTGGTCTCTACGAACAGCCCGCAAAGTCAGAAGAAGC
ACTCTCCGCGTGGGAGAGAGTGTACATTCCTGTTGATCCCGGTGTTGTGC
TCCTCGACATCGCTTTCGTCCCCGATGACTTGAACCACGGCTTTCTCCTG
GGAACCAGGCAAACTCTCTTGGAGACCAAAGATGGTGGTAAAACTTGGGC
TCCACGTTCCATACCATCAGCTGAGGAGGAAGATTTCAACTATAGATTTA
ATTCCATTAGTTTCAAGGGCAAGGAAGGATGGATTGTTGGCAAACCTGCA
ATTTTGTTGCATACTTCTGATGCTGGAGAAAGCTGGGAAAGGATACCATT
AAGTTCTCAACTTCCTGGAGATATGGTTTACATAAAGGCCACCGGAAGAA
AGAGTGCTGAGATGGTGACCGATGAAGGTGCAATATATATTACA
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