FC868923 | Citrus Genome Database

Overview


Name	FC868923
Unique Name	FC868923
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	717

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 8.765e-90
Identity = 156/192 (81.25%), Postives = 175/192 (91.15%), Query Frame = 3

Query:   84 MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY 659
            MEGKEEDVRVGAN++ E QPIGT+AQ+   KDY EPPPAP FEPGELSSWSF+RAGIAEF+ATFLFLYITVLTVMGV +S + C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA++Y++MQCLGAICGA VVKGFQ  QY+ LGGGAN ++ GY+KG GLGAEI+GTFVLVY
Sbjct:    1 MEGKEEDVRVGANKFPERQPIGTSAQSD--KDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVY 190

HSP 2 Score: 26.9498 bits (58), Expect = 8.765e-90
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  682 QRNARDSHVPIL 717
            +RNARDSHVPIL
Sbjct:  199 KRNARDSHVPIL 210

[Close]

BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 8.765e-90
Identity = 156/192 (81.25%), Postives = 175/192 (91.15%), Query Frame = 3

Query:   84 MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY 659
            MEGKEEDVRVGAN++ E QPIGT+AQ+   KDY EPPPAP FEPGELSSWSF+RAGIAEF+ATFLFLYITVLTVMGV +S + C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA++Y++MQCLGAICGA VVKGFQ  QY+ LGGGAN ++ GY+KG GLGAEI+GTFVLVY
Sbjct:    1 MEGKEEDVRVGANKFPERQPIGTSAQSD--KDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVY 190

HSP 2 Score: 26.9498 bits (58), Expect = 8.765e-90
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  682 QRNARDSHVPIL 717
            +RNARDSHVPIL
Sbjct:  199 KRNARDSHVPIL 210

[Close]

BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 322.783 bits (826), Expect = 1.631e-88
Identity = 155/192 (80.73%), Postives = 173/192 (90.10%), Query Frame = 3

Query:   84 MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY 659
            MEGKEEDV VGAN++ E QPIGTAAQT+  KDY EPPPAP FEPGEL SWSFYRAGIAEF+ATFLFLY+TVLTVMGV ++ + C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA+FY++MQCLGAICGA VVKGFQ   Y+  GGGAN+++ GY+KG GLGAEIVGTFVLVY
Sbjct:    1 MEGKEEDVNVGANKFPERQPIGTAAQTES-KDYKEPPPAPFFEPGELKSWSFYRAGIAEFIATFLFLYVTVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVY 191

HSP 2 Score: 25.0238 bits (53), Expect = 1.631e-88
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  682 QRNARDSHVPIL 717
            +R+ARDSHVPIL
Sbjct:  200 KRSARDSHVPIL 211

[Close]

BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 313.923 bits (803), Expect = 7.370e-86
Identity = 154/194 (79.38%), Postives = 172/194 (88.66%), Query Frame = 3

Query:   84 MEGKEEDVRVGANRYRESQPIGTAAQTQDV-KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQ-KSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY 659
            ME KE+DV +GAN++ E QP+G AAQ+QD  KDY EPPPAPLFEP EL+SWSFYRAGIAEF+ATFLFLYITVLTVMGV +  SKC TVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA+FYM+MQ LGAICGA VVKGF+ K ++  L GGAN ++ GY+KGDGLGAEIVGTF+LVY
Sbjct:    1 MEAKEQDVSLGANKFPERQPLGIAAQSQDEPKDYQEPPPAPLFEPSELTSWSFYRAGIAEFIATFLFLYITVLTVMGVVRESSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVY 194

HSP 2 Score: 25.0238 bits (53), Expect = 7.370e-86
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  682 QRNARDSHVPIL 717
            +R+ARDSHVPIL
Sbjct:  203 KRSARDSHVPIL 214

[Close]

BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 2.134e-85
Identity = 155/192 (80.73%), Postives = 169/192 (88.02%), Query Frame = 3

Query:   84 MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY 659
            MEGKEEDVR+GAN++ E   IGTAAQ  D KDY EPPPAPLFEPGEL SWSFYR GIAEFVATFLFLYI++LTVMGVSKS SKC+TVGIQGIAW+FGGMI ALVYCTAGIS GHINPAVTFGLFLARKLSLTRAVFY+IMQCLGAICG  VVKGFQ+  Y   GG  N+++ GY+KGDGLGAEIVGTF+LVY
Sbjct:    1 MEGKEEDVRLGANKFSERHAIGTAAQGTDDKDYKEPPPAPLFEPGELKSWSFYRPGIAEFVATFLFLYISILTVMGVSKSTSKCATVGIQGIAWSFGGMILALVYCTAGIS-GHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQQGLYMGNGGRRNVVAPGYTKGDGLGAEIVGTFILVY 191

HSP 2 Score: 24.6386 bits (52), Expect = 2.134e-85
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1

Query:  682 QRNARDSHVPIL 717
            +R ARDSHVPIL
Sbjct:  200 KRRARDSHVPIL 211

[Close]

BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 1.499e-83
Identity = 151/189 (79.89%), Postives = 166/189 (87.83%), Query Frame = 3

Query:   93 KEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY 659
            +EEDVRVG +R+ E QPIGTAA     +DY+EPP APLFE  ELSSWSFYRAGIAEFVATFLFLY+TVLTVMGVSKS SKC TVGIQGIAWAFGGMIFALVYCTAG+SGGHINPAVTFGL LARKLSLTRAV+Y++MQCLGA+CGA VVK F  + YE  GGGAN +S GY+KGDGLGAE+VGTFVLVY
Sbjct:   11 EEEDVRVGVDRFPERQPIGTAADDLG-RDYSEPPAAPLFEASELSSWSFYRAGIAEFVATFLFLYVTVLTVMGVSKSPSKCGTVGIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVY 198

HSP 2 Score: 22.7126 bits (47), Expect = 1.499e-83
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1

Query:  682 QRNARDSHVPIL 717
            +R ARDSHVP L
Sbjct:  207 KRTARDSHVPAL 218

[Close]

BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 3.926e-66
Identity = 120/175 (68.57%), Postives = 135/175 (77.14%), Query Frame = 3

Query:  135 SQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY 659
            S+ +    +T   KDY +PPPAPL + GEL SWSFYRA IAEF+AT LFLY+TV TV+G  K    C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMI QCLGAICG   VK F K+ Y  LGGGAN ++ GYSKG  LGAEI+GTFVLVY
Sbjct:    2 SKEVSEEGKTHHGKDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVY 176

HSP 2 Score: 24.2534 bits (51), Expect = 3.926e-66
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  682 QRNARDSHVPIL 717
            +R+ARDSH+P+L
Sbjct:  185 KRSARDSHIPVL 196

[Close]

BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 1.480e-65
Identity = 123/170 (72.35%), Postives = 135/170 (79.41%), Query Frame = 3

Query:  174 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY 659
            KDYT+PPPAPL +  EL+ WS YRA IAEF+AT LFLYITV TV+G        V+ + + CS VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV Y+I QCLGAICG  +VKGFQ S Y   GGGAN LS GYSKG GLGAEI+GTFVLVY
Sbjct:   18 KDYTDPPPAPLIDVEELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVKGFQSSYYARYGGGANELSDGYSKGTGLGAEIIGTFVLVY 187

HSP 2 Score: 26.1794 bits (56), Expect = 1.480e-65
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  682 QRNARDSHVPIL 717
            +RNARDSH+P+L
Sbjct:  196 KRNARDSHIPVL 207

[Close]

BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 2.743e-64
Identity = 116/169 (68.64%), Postives = 131/169 (77.51%), Query Frame = 3

Query:  174 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSK-------SKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY 659
            KDY +PPPAPL +P EL+ WS YRA IAEF+AT LFLYITVLT++G  +         ++C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ YMI QC GAICGA + KGFQKS Y   GGG N +S GY+KG  LGAEI+GTFVLVY
Sbjct:   17 KDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVY 185

HSP 2 Score: 26.5646 bits (57), Expect = 2.743e-64
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  682 QRNARDSHVPIL 717
            +RNARDSHVP+L
Sbjct:  194 KRNARDSHVPVL 205

[Close]

BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 1.034e-63
Identity = 115/170 (67.65%), Postives = 133/170 (78.24%), Query Frame = 3

Query:  174 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY 659
            KDYT+PPPAPL +  EL SWS YRA IAEF+AT LFLYITV TV+G         S + + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGAICG  +VK FQ + ++  GGGAN L+ GYS+G GLGAEI+GTFVLVY
Sbjct:   19 KDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGANSLASGYSRGTGLGAEIIGTFVLVY 188

HSP 2 Score: 26.5646 bits (57), Expect = 1.034e-63
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  682 QRNARDSHVPIL 717
            +RNARDSHVP+L
Sbjct:  197 KRNARDSHVPVL 208

The following BLAST results are available for this feature:

BLAST of FC868923 vs. ExPASy Swiss-Prot

BLAST of FC868923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117


Match Name	E-value	Identity	Description
PIP11_VICFA	8.765e-90	81.25	Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1	[more]
PIP11_ARATH	8.765e-90	81.25	Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1...	[more]
PIP15_ARATH	1.631e-88	80.73	Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ...	[more]
PIP2_PEA	7.370e-86	79.38	Probable aquaporin PIP-type 7a OS=Pisum sativum GN...	[more]
PIP11_MAIZE	2.134e-85	80.73	Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1	[more]
PIP16_MAIZE	1.499e-83	79.89	Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1	[more]
PIP27_ARATH	3.926e-66	68.57	Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7...	[more]
PIP22_ORYSJ	1.480e-65	72.35	Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j...	[more]
PIP27_MAIZE	2.743e-64	68.64	Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1	[more]
PIP21_MAIZE	1.034e-63	67.65	Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	C31006E10EF AbioticL1 Citrus clementina cDNA clone C31006E10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC868923 ID=FC868923; Name=FC868923; organism=Citrus clementina; type=EST; length=717bp
GGAGCCCGTTGTGCCATTTATTTCTTCAATTCACTCCCAAGAAACTTGAA
CCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGA
GGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAA
CCGCGGCTCAGACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCG
CCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGG
CATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAA
CAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATC
CAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTG
CACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGC
TGTTCTTGGCCCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATA
ATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTTTCA
GAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCAAAG
GCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTTGTT
CTTGTTTACCTGTCTTCTCGGCCACTGATGCCAGCGCAATGCCCGCGATT
CTCATGTTCCTATATTG