FC868923

Overview
NameFC868923
Unique NameFC868923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 54/147 (36.73%), Postives = 74/147 (50.34%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLV 656
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  Y+  Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFV 142          
BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 539
            EL S SF+RA  AEF AT  +++  +      S  +     + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGL-----GSSLRWAPGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL 104          
BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLV 656
            EL S +F RA +AEF+AT LF++  + + +  + S        +  IA AFG  I  LV     +SG HINPAVT    +   +S  RA FY+  Q LGA+ GAA++   + +  E+ G    N L    + G  +  E+  T  LV
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPPS-----VLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL--HEITPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLV 142          
BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: YI7H_SCHPO (Uncharacterized membrane protein C977.17 OS=Schizosaccharomyces pombe GN=SPAC977.17 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 46/124 (37.10%), Postives = 58/124 (46.77%), Query Frame = 3
Query:  237 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQG------IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANM 590
            F+R G AEF+ T       VL V GV  +     T G  G       AW FG M+   VY   GISGGH+NPAVT  L + RK    +   Y+  Q  GA  G A+  G+  S      GG ++
Sbjct:  309 FFREGFAEFLGTL------VLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLG--VYIAGGISGGHVNPAVTISLAIFRKFPWYKVPIYIFFQIWGAFFGGALAYGYHWSSITEFEGGKDI 424          
BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 56/168 (33.33%), Postives = 80/168 (47.62%), Query Frame = 3
Query:  216 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAG--ISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY------LSSRPLMPAQCP 695
            GE S   F+R  + E V TFLF++I V   M    + +K ST G    A A G  +   V  TAG  ISGGH+NPAVT  L +   ++L R+  Y+  Q L +     +++         L    + L++G     G+ AE V TF L++      L  R L+P   P
Sbjct:   10 GEASEPDFFRGVLGELVLTFLFVFIGVGAAM-TDGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGG----LATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRKLLPGAGP 172          
BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 45/151 (29.80%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  243 RAGIAEFVATFLFLYITVLTVMGVSK-------SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK----GFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYL 662
            RA +AEF++TF+F++    +++ + K            +  G+  +A A    +FA V     +SGGH+NPAVTF   +  ++S+ RA++Y + Q +GAI    +++    G +   +         ++ G S+  GL  EI+ TF LVY+
Sbjct:   24 RATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFH--------VASGVSELHGLLMEIILTFALVYV 166          
BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 50/141 (35.46%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  243 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY 659
            RA +AEF++T +F++    + +  +K     +T   G+   A A    +F  V   A ISGGH+NPAVTFG+ L   ++L R + Y I Q LG++  A  +  F      +   G   LS G    + L  EIV TF LVY
Sbjct:   22 RAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSV-AACFLLSFATGGEPIPAFG---LSAGVGSLNALVFEIVMTFGLVY 158          
BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLV 656
            EL S +F RA +AEF+AT LF++  + + +  + S        +  IA AFG  I  LV     +SG HINPAVT    +   +S  RA FY+  Q LGA+ GAA++   + +  E+ G    N L    + G  +  E+  T  LV
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPPS-----VLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL--HEITPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLV 142          
BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 50/146 (34.25%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  243 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKG------DGLGAEIVGTFVLVY 659
            RA ++EFVAT +F++    +V G+ K      T+G +  +A A    + A V  +   SGGH+NPAVTFG+ + R++S  RA  Y   Q LGA+    +++        +  GG  M   G++ G        L  E+V TF LVY
Sbjct:   29 RAALSEFVATAVFVFAAEGSVYGLWKMYRDTGTLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLR--------LASGG--MRPMGFTLGHRIHERHALLLEVVMTFGLVY 164          
BLAST of FC868923 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 48/141 (34.04%), Postives = 71/141 (50.35%), Query Frame = 3
Query:  243 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY 659
            +A +AEF+AT LF++  V + +  S+          G+  IA A    +F  V   A ISGGH+NPAVTFGL +   +++   + Y + Q LGA     +++     Q     G       G S+ +G+  EIV TF LVY
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQYVTHGQAIPTHG-----VSGISEIEGVVMEIVITFALVY 154          
The following BLAST results are available for this feature:
BLAST of FC868923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MIP_MOUSE4.609e-1236.73Lens fiber major intrinsic protein OS=Mus musculus... [more]
MIP_HUMAN4.609e-1240.19Lens fiber major intrinsic protein OS=Homo sapiens... [more]
AQP2_MOUSE4.609e-1235.37Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
YI7H_SCHPO6.019e-1237.10Uncharacterized membrane protein C977.17 OS=Schizo... [more]
TIP43_MAIZE6.019e-1233.33Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP32_ARATH6.019e-1229.80Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP12_ARATH6.019e-1235.46Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
AQP2_RAT6.019e-1235.37Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
TIP32_ORYSJ7.861e-1234.25Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP23_MAIZE7.861e-1234.04Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31006E10EF AbioticL1 Citrus clementina cDNA clone C31006E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868923 ID=FC868923; Name=FC868923; organism=Citrus clementina; type=EST; length=717bp
GGAGCCCGTTGTGCCATTTATTTCTTCAATTCACTCCCAAGAAACTTGAA
CCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGA
GGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAA
CCGCGGCTCAGACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCG
CCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGG
CATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAA
CAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATC
CAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTG
CACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGC
TGTTCTTGGCCCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATA
ATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTTTCA
GAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCAAAG
GCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTTGTT
CTTGTTTACCTGTCTTCTCGGCCACTGATGCCAGCGCAATGCCCGCGATT
CTCATGTTCCTATATTG
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