FC868925

Overview
NameFC868925
Unique NameFC868925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_SPISO (Ribonucleoside-diphosphate reductase small chain OS=Spisula solidissima PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.620e-49
Identity = 90/136 (66.18%), Postives = 111/136 (81.62%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            P+L +  +RF + PI+Y  +W+MYKKA+ASFWTAEEVDLS+D+ HWE L   EKHFISHVLAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAMENIHSEMYSLL++TY +D +E+  LFNAIE +PCV ++
Sbjct:   63 PLLADNPRRFVVLPIQYHDIWKMYKKAEASFWTAEEVDLSKDMAHWESLKKEEKHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEK 198          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_DICDI (Ribonucleoside-diphosphate reductase small subunit OS=Dictyostelium discoideum GN=rnrB-1 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.340e-48
Identity = 90/137 (65.69%), Postives = 109/137 (79.56%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            PIL E   RF +FPI+Y  +W MYKKA AS W AEE+DL  D   WE +L D+E+HFISHVLAFFAASDGIV ENLA RF++++QIPEAR FYGFQIA+ENIHSE YSLL+ETY +D + K +LFNAIE IPC+ ++
Sbjct:   13 PILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEYKLTDNERHFISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYIKDKQTKDKLFNAIETIPCIKKK 149          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_VACCA (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Ankara) GN=MVA032L PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.991e-48
Identity = 88/136 (64.71%), Postives = 108/136 (79.41%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            PIL     RF +FPI+Y  +W MYKKA+ASFWT EEVD+S+D+  W +L   EK+FI HVLAFFAASDGIV ENLA RF  ++QI EAR FYGFQ+A+ENIHSEMYSLL++TY +DS EK+ LFNAIE +PCV ++
Sbjct:    3 PILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKK 138          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_VARV (Ribonucleoside-diphosphate reductase small chain OS=Variola virus GN=F4L PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.212e-48
Identity = 88/136 (64.71%), Postives = 109/136 (80.15%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            PIL +   RF +FPI+Y  +W MYKKA+ASFWT EEVD+S+D+  W +L   EK+FI HVLAFFAASDGIV ENLA RF  ++QI EAR FYGFQ+A+ENIHSEMYSLL++TY +DS EK+ LFNAIE +PCV ++
Sbjct:    3 PILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKK 138          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_VACCW (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Western Reserve) GN=VACWR043 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.212e-48
Identity = 88/136 (64.71%), Postives = 108/136 (79.41%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            PIL     RF +FPI+Y  +W MYKKA+ASFWT EEVD+S+D+  W +L   EK+FI HVLAFFAASDGIV ENLA RF  ++QI EAR FYGFQ+A+ENIHSEMYSLL++TY +DS EK+ LFNAIE +PCV ++
Sbjct:    3 PILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKK 138          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_VACCC (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Copenhagen) GN=F4L PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.212e-48
Identity = 88/136 (64.71%), Postives = 108/136 (79.41%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            PIL     RF +FPI+Y  +W MYKKA+ASFWT EEVD+S+D+  W +L   EK+FI HVLAFFAASDGIV ENLA RF  ++QI EAR FYGFQ+A+ENIHSEMYSLL++TY +DS EK+ LFNAIE +PCV ++
Sbjct:    3 PILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKK 138          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_YLDV (Ribonucleoside-diphosphate reductase small chain OS=Yaba-like disease virus GN=20L PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.807e-48
Identity = 91/136 (66.91%), Postives = 110/136 (80.88%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            PIL     ++ +FPI Y+ +W+MYKKA ASFWT EEVDLS+D   W +L D+EK+FI H+LAFFAASDGIV ENLA RF +++QI EAR FYGFQIAMENIHSEMYSLL++TY  DSKEK+ LFNAIEN+ CV Q+
Sbjct:    7 PILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLKLSDNEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIENMNCVKQK 142          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_DROME (Ribonucleoside-diphosphate reductase subunit M2 OS=Drosophila melanogaster GN=RnrS PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 6.807e-48
Identity = 87/136 (63.97%), Postives = 109/136 (80.15%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            P+L E  +RF +FPI+Y  +W+MYKKA+ASFWT EEVDLS+D+  W RL D E+HFISHVLAFFAASDGIV ENL  RF  ++QI EAR FYGFQIAMEN+HSEMYS+L++TY +D  ++  LFNAIE +P V ++
Sbjct:   75 PLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVKRK 210          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2B_MOUSE (Ribonucleoside-diphosphate reductase subunit M2 B OS=Mus musculus GN=Rrm2b PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.891e-48
Identity = 85/136 (62.50%), Postives = 111/136 (81.62%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            P+L + ++RF +FPI+Y  +W MYK+AQASFWTAEEVDLS+D+ HW +L   EK+FISH+LAFFAASDGIV ENL  RF  ++Q+PEAR FYGFQI +EN+HSEMYSLL++TY +D K++  LFNAIE +P V ++
Sbjct:   33 PLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKK 168          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2B_PONAB (Ribonucleoside-diphosphate reductase subunit M2 B OS=Pongo abelii GN=RRM2B PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.161e-47
Identity = 85/136 (62.50%), Postives = 112/136 (82.35%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            P+L + ++RF +FPI+Y  +W+MYK+AQASFWTAEEVDLS+D+ HW +L   EK+FISH+LAFFAASDGIV ENL  RF  ++Q+PEAR FYGFQI +EN+HSEMYSLL++TY +D K++  LFNAIE +P V ++
Sbjct:   33 PLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKK 168          
The following BLAST results are available for this feature:
BLAST of FC868925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RIR2_SPISO1.620e-4966.18Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_DICDI2.340e-4865.69Ribonucleoside-diphosphate reductase small subunit... [more]
RIR2_VACCA3.991e-4864.71Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VARV5.212e-4864.71Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VACCW5.212e-4864.71Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VACCC5.212e-4864.71Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_YLDV6.807e-4866.91Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_DROME6.807e-4863.97Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2B_MOUSE8.891e-4862.50Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2B_PONAB1.161e-4762.50Ribonucleoside-diphosphate reductase subunit M2 B ... [more]

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Properties
Property NameValue
Genbank descriptionC31006F01EF AbioticL1 Citrus clementina cDNA clone C31006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868925 ID=FC868925; Name=FC868925; organism=Citrus clementina; type=EST; length=715bp
GAGAGACAAAGTCACTCAACAAATCGCNCAAGCAGAGGCAGGGAAACGAA
AGGCATGATCGTTCATCAGTCACTAACGATTTTGCTATCCATCAACAATT
GAAATTCTGTCCACTTGCTCTCTCTAACAAGAAGAGGTTTTTGCAGGGTT
TTATTACTTTTCTTTCTCTTCTCGCCACAAATAACAAAAACAGAACTTGT
GAGGAAAAATGGGTTCCTTGAAAAACGAAACAGAGAATGAAGTAAACCAA
CGTGAGCAGGGAGAACAAGAACAGGAAGACCAAGAGCCAATATTAATGGA
GCAAAACCAGAGGTTTTGTATGTTCCCCATAAGGTACAAGCAAGTTTGGG
AGATGTACAAGAAGGCTCAAGCCAGTTTCTGGACCGCCGAGGAGGTTGAT
CTTTCCCAGGATGTACAGCACTGGGAACGACTATTGGATTCTGAGAAACA
CTTTATAAGCCATGTGTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTT
TGGAAAATTTGGCTGCAAGGTTCCTAAATGACATTCAAATTCCAGAGGCT
CGAGCATTTTATGGATTTCAAATAGCAATGGAGAATATTCATTCTGAGAT
GTACAGCTTGCTTCTGGAGACATACATNCAAGACTCAAAAGAGAAGCATA
GATTGTTTAATGCAATTGAAAACATTCCCTGTGTGGCTCAGAGGCTAATG
GGCTCTGGATTGGAT
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