FC868925

Overview
NameFC868925
Unique NameFC868925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig950 contig Ccv1_Contig950:9..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_ASFB7 (Ribonucleoside-diphosphate reductase small chain OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=Ba71V-044 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.512e-28
Identity = 54/132 (40.91%), Postives = 85/132 (64.39%), Query Frame = 2
Query:  290 ILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCV 685
            +L+E +QRF +FPI++ + W  YKK ++  WTA+EVD+ +D+  WE +   ++ F   +LAFF  +D IV+ENL   F+ +I++ E   FY  Q A E +HSE YS+ ++T   D KE+ R+F+ IE  P +
Sbjct:   11 LLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIEKHPII 142          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_OSHV1 (Ribonucleoside-diphosphate reductase small chain OS=Ostreid herpesvirus 1 GN=ORF20 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 34/116 (29.31%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  326 PIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIEN 673
            P  Y+Q+ +   K ++S W   E+D   D+  WE++ ++E+  +  VLAFFA  D +V + +A  F ++  +PE + F  +Q   E +H  +Y+  L+   +D      L NA ++
Sbjct:   76 PAVYQQLRDFATKMESSSWQQTEIDAESDIPTWEQISENERDCVRKVLAFFAVGDTLVKDRIAI-FADEFPLPECKDFIDWQTVNEGVHQRVYNNYLDALVKDKIYLADLVNAYKD 190          
The following BLAST results are available for this feature:
BLAST of FC868925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RIR2_ASFB73.512e-2840.91Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_OSHV12.287e-1129.31Ribonucleoside-diphosphate reductase small chain O... [more]

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Properties
Property NameValue
Genbank descriptionC31006F01EF AbioticL1 Citrus clementina cDNA clone C31006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868925 ID=FC868925; Name=FC868925; organism=Citrus clementina; type=EST; length=715bp
GAGAGACAAAGTCACTCAACAAATCGCNCAAGCAGAGGCAGGGAAACGAA
AGGCATGATCGTTCATCAGTCACTAACGATTTTGCTATCCATCAACAATT
GAAATTCTGTCCACTTGCTCTCTCTAACAAGAAGAGGTTTTTGCAGGGTT
TTATTACTTTTCTTTCTCTTCTCGCCACAAATAACAAAAACAGAACTTGT
GAGGAAAAATGGGTTCCTTGAAAAACGAAACAGAGAATGAAGTAAACCAA
CGTGAGCAGGGAGAACAAGAACAGGAAGACCAAGAGCCAATATTAATGGA
GCAAAACCAGAGGTTTTGTATGTTCCCCATAAGGTACAAGCAAGTTTGGG
AGATGTACAAGAAGGCTCAAGCCAGTTTCTGGACCGCCGAGGAGGTTGAT
CTTTCCCAGGATGTACAGCACTGGGAACGACTATTGGATTCTGAGAAACA
CTTTATAAGCCATGTGTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTT
TGGAAAATTTGGCTGCAAGGTTCCTAAATGACATTCAAATTCCAGAGGCT
CGAGCATTTTATGGATTTCAAATAGCAATGGAGAATATTCATTCTGAGAT
GTACAGCTTGCTTCTGGAGACATACATNCAAGACTCAAAAGAGAAGCATA
GATTGTTTAATGCAATTGAAAACATTCCCTGTGTGGCTCAGAGGCTAATG
GGCTCTGGATTGGAT
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