FC868938

Overview
NameFC868938
Unique NameFC868938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11517 contig Ccv1_Contig11517:68..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 2
Query:  506 PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAXH 685
            PE+ DWR+ G V+PVK+Q  CGSCW FST  ++E       GK ISLSEQ+L+DC +  H
Sbjct:    2 PESIDWRDKGAVTPVKNQNPCGSCWAFSTVATVEGINKIRTGKLISLSEQELLDCDRRSH 61          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 2
Query:  503 LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQ 676
            +P++ DW + G V+PVK+QG CGSCW FS TG+LE    +  GK +SLSEQ LVD ++
Sbjct:    1 VPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDSSR 58          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 2
Query:  506 PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAXH 685
            PE+ DWRE G V+PVK+Q  CGSCW FST  ++E       G+ ISLSEQ+L+DC    H
Sbjct:    2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCEYRSH 61          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CATL1_PARTE (Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT00020990001 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 49/148 (33.11%), Postives = 77/148 (52.03%), Query Frame = 2
Query:  257 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRS--TNRKGLSYRLGLNKFADWSWEEFQRHRLG-----AAQNCSATTKGNHKLTADVLPETKDWRESGIVS--PVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA 673
            +A +  +Y + Y +  +   R+  F+ NL+ IR+   + +  ++ L LN+FAD S +EF +  L       A+  +A +   +K  A+V     DW ++  V    VK+QG CGSCW FS  G+LE        +   LSEQ LVDC+
Sbjct:   26 YANWKMKYNRRYTNQRDEMYRYKVFTDNLNYIRAFYESPEEATFTLELNQFADMSQQEFAQTYLSLKVPRTAKLNAANSNFQYK-GAEV-----DWTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNRKYELSEQDLVDCS 167          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: PEPT1_DERFA (Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 47/149 (31.54%), Postives = 72/149 (48.32%), Query Frame = 2
Query:  254 SFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---------LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA 673
            +F  F + + K Y +VEE ++    F ++L  + +   KG      +N  +D S +EF+   L +A+      K    L A+          +P   D R    V+P++ QG CGSCW FS   + E+AY       + LSEQ+LVDCA
Sbjct:   25 TFEEFKKAFNKNYATVEEEEVARKNFLESLKYVEAN--KG-----AINHLSDLSLDEFKNRYLMSAE-AFEQLKTQFDLNAETSACRINSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCA 165          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 42/146 (28.77%), Postives = 71/146 (48.63%), Query Frame = 2
Query:  254 SFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGL-SYRLGLNKFADWSWEEFQR---HRLGAAQNCSATTKGNHKLTADVLPETKDWRE-SGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQ 676
            +F  F  +Y + Y + EE   R   F+ NL   +    + L +   G+  F+D + EEF R   HR    +      +   +   + +P T DWR+  G++S VK Q  C  CW  +  G++EA +   + + + LS Q+L+DC +
Sbjct:   41 AFTLFQIQYNRSYSNPEEYARRLDIFAHNLAQAQQLEEEDLGTAEFGVTPFSDLTEEEFGRLYGHRRMDGEAPKVGREVGSEEWGESVPPTCDWRKLDGVISSVKKQESCSCCWAMAAAGNIEALWAIKYRQSVELSVQELLDCGR 186          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: PEPT1_EURMA (Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 48/149 (32.21%), Postives = 70/149 (46.98%), Query Frame = 2
Query:  254 SFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---------LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA 673
            +F  F + + K Y + E+ ++    F ++L  + S   KG      +N  +D S +EF+   L  A N     K    L A+          LP   D R    V+P++ QG CGSCW FS   S E+AY       + L+EQ+LVDCA
Sbjct:   25 TFEEFKKAFNKTYATPEKEEVARKNFLESLKYVESN--KG-----AINHLSDLSLDEFKNQFLMNA-NAFEQLKTQFDLNAETYACSINSVSLPSELDLRSLRTVTPIRMQGGCGSCWAFSGVASTESAYLAYRNMSLDLAEQELVDCA 165          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CPP3_ENTHI (Cysteine proteinase 3 (Fragment) OS=Entamoeba histolytica GN=CPNP PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 48/150 (32.00%), Postives = 78/150 (52.00%), Query Frame = 2
Query:  245 HALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLN-KFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVL--PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFG---KGISLSEQQLVDCAQ 676
            +A+ F  +A    K + +VE ++ R A F+ N   +   N+KG S++L ++  FA  + EE++            T + N K+T   +  PE+ DWR  G V+P++DQ  CGSC+TF +  +LE       G     + LSE+ LV C +
Sbjct:    5 NAIDFNTWAANNNKHFTAVEALRRR-AIFNMNARFVAEFNKKG-SFKLSVDGPFAAMTNEEYR-----TLLKSKRTVEENGKVTYLNIQAPESVDWRAQGKVTPIRDQAQCGSCYTFGSLAALEGRLLIEKGGNANTLDLSEEHLVQCTR 147          
The following BLAST results are available for this feature:
BLAST of FC868938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
MEX2_JACME3.286e-1253.33Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATL1_SHEEP3.286e-1253.45Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
MEX1_JACME4.292e-1253.33Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATL1_PARTE7.321e-1233.11Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT0... [more]
PEPT1_DERFA1.249e-1131.54Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 P... [more]
CATW_FELCA1.249e-1128.77Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
PEPT1_EURMA2.130e-1132.21Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV... [more]
CPP3_ENTHI6.198e-1132.00Cysteine proteinase 3 (Fragment) OS=Entamoeba hist... [more]

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Properties
Property NameValue
Genbank descriptionC31006G04EF AbioticL1 Citrus clementina cDNA clone C31006G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868938 ID=FC868938; Name=FC868938; organism=Citrus clementina; type=EST; length=685bp
TCGCCGGGGGCATTCATTTAATCCGAAGCCCTTGAGTGCGGTGCACTCTC
TCCAAACAAAACAGACACAATCATTAGGCATGGCTCGCCCTGAACATTTG
GTCTCGTCCATCATCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATC
AAGCTTCGACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCC
GTGACTTCGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCT
CTCTCCTTTGCCCGTTTTGCTCGCAGGTATGGAAAGATTTACGAGTCCGT
TGAGGAGATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAA
TCAGATCTACGAATCGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAG
TTTGCTGATTGGAGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGC
ACAAAACTGCTCTGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATG
TGCTTCCAGAAACGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTT
AAAGACCAAGGTCACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATC
TCTTGAGGCTGCTTACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAG
AACAGCAGCTTGTAGACTGTGCCCAAGCTTTNCAC
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