FC868938

Overview
NameFC868938
Unique NameFC868938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11517 contig Ccv1_Contig11517:68..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 67/164 (40.85%), Postives = 86/164 (52.44%), Query Frame = 2
Query:  209 ETSVLQVIGQARHALS--FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRK----GLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNH--KLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQ 676
            + +VL + G A  A S  +  F  +YG+ Y   EE   R   F +N   I   N+K     +++ L +NKF D + EEF     G     SA     +  K T     E  DWR  G V+PVKDQG CGSCW FSTTGSLE  +    G  ISL+EQQLVDC++
Sbjct:    2 KVAVLFLCGVALAAASPSWEHFKGKYGRQYVDAEEDSYRRVIFEQNQKYIEEFNKKYENGEVTFNLAMNKFGDMTLEEFNAVMKGNIPRRSAPVSVFYPKKETGPQATEV-DWRTKGAVTPVKDQGQCGSCWAFSTTGSLEGQHFLKTGSLISLAEQQLVDCSR 164          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.331e-21
Identity = 62/149 (41.61%), Postives = 88/149 (59.06%), Query Frame = 2
Query:  257 FARFARRYGKIYESVEEMKLRFATFSKNLDLIR--STNRKGL-SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTK-GNHKL-----TADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQ 676
            F  +   +G++Y + EE   R   F  N + IR  + NRK   S+RLGLNKFAD + +EF +  L A ++ S   K  N K+     + D  P + DWR+ G+++ VK QG CG  W FS TG++EAA+  A G  +SLSEQ+LVDC +
Sbjct:   44 FQLWKSEHGRVYHNHEEEAKRLEIFKNNSNYIRDMNANRKSPHSHRLGLNKFADITPQEFSKKYLQAPKDVSQQIKMANKKMKKEQYSCDHPPASWDWRKKGVITQVKYQGGCGRGWAFSATGAIEAAHAIATGDLVSLSEQELVDCVE 192          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.331e-21
Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = 2
Query:  251 LSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQ-RHRLGAAQNCSATTKGNH--KLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 670
            + FA F ++YGK+Y+  +E   RF  F +N++  +           G+  F+D + EEF+ R+R GA+   +A  +      +T    P   DWRE G V+PVK QG CGSCW FST G++E  +  A    +SLSEQ LV C
Sbjct:   39 MRFAAFKKKYGKVYKDAKEEAFRFRAFEENMEQAKIQAAANPYATFGVTPFSDMTREEFRARYRNGASYFAAAQKRLRKTVNVTTGRAPAAVDWREKGAVTPVKVQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSC 181          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 57/134 (42.54%), Postives = 79/134 (58.96%), Query Frame = 2
Query:  299 VEEMKLRFATFSKNLDLI--RSTNRKGLSYRLGLNKFADWSWEEFQRHRLGA----AQNCSATTKGNHKLTADV----LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 670
            + +   RF  F  NL  I   + + K  +Y+LGL KF D + +E+++  LGA    A+  +     N K +A V    +PET DWR+ G V+P+KDQG CGSCW FSTT ++E       G+ ISLSEQ+LVDC
Sbjct:   67 INDQDKRFNIFKDNLRFIDLHNEDNKNATYKLGLTKFTDLTNDEYRKLYLGARTEPARRIAKAKNVNQKYSAAVNGKEVPETVDWRQKGAVNPIKDQGTCGSCWAFSTTAAVEGINKIVTGELISLSEQELVDC 200          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: ANAN_ANACO (Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 53/143 (37.06%), Postives = 82/143 (57.34%), Query Frame = 2
Query:  257 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRS-TNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTK---GNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA 673
            F  +   YG++Y+  +E  LRF  F  N++ I +  NR G SY LG+N+F D +  EF     G +   +   +       +    +P++ DWR+SG V+ VK+QG CGSCW F++  ++E+ Y    G  +SLSEQQ++DCA
Sbjct:   37 FEEWMAEYGRVYKDNDEKMLRFQIFKNNVNHIETFNNRNGNSYTLGINQFTDMTNNEFVAQYTGLSLPLNIKREPVVSFDDVDISSVPQSIDWRDSGAVTSVKNQGRCGSCWAFASIATVESIYKIKRGNLVSLSEQQVLDCA 179          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 59/145 (40.69%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  257 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKG----LSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTA---DVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 670
            +A +   +GK Y +V E + R+A F  NL  I   N        S+RLGLN+FAD + EE++   LG         K + +  A   + LPE+ DWR  G V+ +KDQG CGSCW FS   ++E       G  ISLSEQ+LVDC
Sbjct:   40 YAEWKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRFADLTNEEYRDTYLGLRNKPRRERKVSDRYLAADNEALPESVDWRTKGAVAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISLSEQELVDC 184          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21
Identity = 62/159 (38.99%), Postives = 84/159 (52.83%), Query Frame = 2
Query:  227 VIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVL--------PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQA 679
            V    ++  SF  + R   K Y   E M  R+  F KN+D + + N KG    LGLN+ AD S EE++ + LG   +      G HK    +         P   DWRE   V+PVKDQG CGSC++FSTTGS+E       GK +SLSEQ ++DC+ +
Sbjct:   24 VFSHKQYQDSFIDWMRSNNKAYTHKEFMP-RYEEFKKNMDYVHNWNSKGSKTVLGLNQHADLSNEEYRLNYLGTRAHIKLN--GYHKRNLGLRLNRPQFKQPLNVDWREKDAVTPVKDQGQCGSCYSFSTTGSVEGVTAIKTGKLVSLSEQNILDCSSS 179          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CYSP7_DICDI (Cysteine proteinase 7 OS=Dictyostelium discoideum GN=cprG PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.058e-21
Identity = 58/152 (38.16%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  224 QVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKG--ISLSEQQLVDCA 673
            Q + +  +  +F  +   + + Y S EE   R+  F  N+D +   N KG    LGLN FAD S EE++   LG   + S+          D   +  DWR  G V+P+K+QG CG CW+FSTTG+ E A + A GK   +SLSEQ L+DC+
Sbjct:   19 QQLSEVEYRNAFTNWMIAHQRHYSS-EEFNGRYNIFKANMDYVNEWNTKGSETVLGLNVFADISNEEYRATYLGTPFDASSLEMTESDKIFDASAQV-DWRTQGAVTPIKNQGQCGGCWSFSTTGATEGAQYLANGKKNLVSLSEQNLIDCS 168          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 58/135 (42.96%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  281 GKIYESVEEMKLRFATFSKNLDLIRSTNRK-GLSYRLGLNKFADWSWEEFQRHRLGAA---QNCSATTKGNHKLTADVLPETKDWRESGIVSP-VKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 670
            GK Y  + E + RF  F  NL  I   N     SY  GLNKF+D + +EFQ   LG     ++ S   +       DVLP+  DWRE G V P VK QG CGSCW F+ TG++E       G+ +SLSEQ+L+DC
Sbjct:   49 GKNYNGLGEKERRFKIFKDNLKRIEEHNSDPNRSYERGLNKFSDLTADEFQASYLGGKMEKKSLSDVAERYQYKEGDVLPDEVDWRERGAVVPRVKRQGECGSCWAFAATGAVEGINQITTGELVSLSEQELIDC 183          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CYSP6_DICDI (Cysteine proteinase 6 OS=Dictyostelium discoideum GN=cprF PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 58/153 (37.91%), Postives = 84/153 (54.90%), Query Frame = 2
Query:  224 QVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKG-NHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKG--ISLSEQQLVDCA 673
            Q + + ++  +F  +   + + Y S EE   RF  F  N+D I   N KG    LGLN FAD + EE++   LG   + S+     + K+   V   + DWR  G V+P+K+QG CG CW+FS TG+ E A + A G     S+SEQQL+DC+
Sbjct:   19 QQLSELQYRNAFTNWMIAHQRHYSS-EEFNGRFNIFKANMDYINEWNTKGSETVLGLNVFADITNEEYRATYLGTPFDASSLEMTPSEKVFGGVQANSVDWRAKGAVTPIKNQGECGGCWSFSATGATEGAQYIANGDSDLTSVSEQQLIDCS 170          
The following BLAST results are available for this feature:
BLAST of FC868938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
CYSP2_HOMAM7.804e-2240.85Digestive cysteine proteinase 2 OS=Homarus america... [more]
P34_SOYBN1.331e-2141.61P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
CYSP_TRYBB1.331e-2138.46Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
GCP1_ARATH1.739e-2142.54Germination-specific cysteine protease 1 OS=Arabid... [more]
ANAN_ANACO2.271e-2137.06Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2[more]
ORYA_ORYSJ2.965e-2140.69Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CYSP3_DICDI3.873e-2138.99Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
CYSP7_DICDI5.058e-2138.16Cysteine proteinase 7 OS=Dictyostelium discoideum ... [more]
CPR2_ARATH1.472e-2042.96Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
CYSP6_DICDI1.922e-2037.91Cysteine proteinase 6 OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionC31006G04EF AbioticL1 Citrus clementina cDNA clone C31006G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868938 ID=FC868938; Name=FC868938; organism=Citrus clementina; type=EST; length=685bp
TCGCCGGGGGCATTCATTTAATCCGAAGCCCTTGAGTGCGGTGCACTCTC
TCCAAACAAAACAGACACAATCATTAGGCATGGCTCGCCCTGAACATTTG
GTCTCGTCCATCATCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATC
AAGCTTCGACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCC
GTGACTTCGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCT
CTCTCCTTTGCCCGTTTTGCTCGCAGGTATGGAAAGATTTACGAGTCCGT
TGAGGAGATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAA
TCAGATCTACGAATCGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAG
TTTGCTGATTGGAGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGC
ACAAAACTGCTCTGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATG
TGCTTCCAGAAACGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTT
AAAGACCAAGGTCACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATC
TCTTGAGGCTGCTTACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAG
AACAGCAGCTTGTAGACTGTGCCCAAGCTTTNCAC
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