FC868938

Overview
NameFC868938
Unique NameFC868938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11517 contig Ccv1_Contig11517:68..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 50/139 (35.97%), Postives = 78/139 (56.12%), Query Frame = 2
Query:  275 RYGKIYESVEEMKLRFATFSKNLDLIRSTNRK-GLS---YRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQA 679
            +Y K Y  VEE +L+ A + +NL +I+  N++ GL    + + +N FAD + EEF++         + T     K  +  LP  KDWR+ G V+PV++QG CGSCW F+  G++E       G    LS Q L+DC+++
Sbjct:   35 KYAKSYSPVEE-ELKRAVWEENLKMIQLHNKENGLGKNGFTMEMNAFADTTGEEFRKSLSDILIPAAVTNPSAQKQVSIGLPNFKDWRKEGYVTPVRNQGKCGSCWAFAAVGAIEGQMFSKTGNLTPLSVQNLLDCSKS 172          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CYSP2_HORVU (Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 53/132 (40.15%), Postives = 69/132 (52.27%), Query Frame = 2
Query:  305 EMKLRFATFSKNLDLIRSTNRKG-LSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGN------HKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQA 679
            E   RF TF  N   I S N++G   YRL LN+F D    EF+   +G  +  + +   +        L    LP + DWR+ G V+ VKDQG CGSCW FST  S+E       G  +SLSEQ+L+DC  A
Sbjct:   61 EKHRRFGTFKSNAHFIHSHNKRGDHPYRLHLNRFGDMDQAEFRATFVGDLRRDTPSKPPSVPGFMYAALNVSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTA 192          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 48/143 (33.57%), Postives = 76/143 (53.15%), Query Frame = 2
Query:  257 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTN-RKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTK---GNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA 673
            F  +   YG++Y+  +E   RF  F  N+  I + N R   SY LG+N+F D +  EF     G +   +   +       +    +P++ DWR+ G V+ VK+Q  CGSCW+F+   ++E  Y    G  +SLSEQ+++DCA
Sbjct:   37 FEEWMAEYGRVYKDDDEKMRRFQIFKNNVKHIETFNSRNENSYTLGINQFTDMTKSEFVAQYTGVSLPLNIEREPVVSFDDVNISAVPQSIDWRDYGAVNEVKNQNPCGSCWSFAAIATVEGIYKIKTGYLVSLSEQEVLDCA 179          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CYSP1_HORVU (Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=EPB1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 53/132 (40.15%), Postives = 68/132 (51.52%), Query Frame = 2
Query:  305 EMKLRFATFSKNLDLIRSTNRKG-LSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGN------HKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQA 679
            E   RF TF  N   I S N++G   YRL LN+F D    EF+   +G  +  +     +        L    LP + DWR+ G V+ VKDQG CGSCW FST  S+E       G  +SLSEQ+L+DC  A
Sbjct:   61 EKHRRFGTFKSNAHFIHSHNKRGDHPYRLHLNRFGDMDQAEFRATFVGDLRRDTPAKPPSVPGFMYAALNVSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTA 192          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CATL1_HUMAN (Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 54/143 (37.76%), Postives = 78/143 (54.55%), Query Frame = 2
Query:  257 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTN---RKGL-SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA 673
            + ++   + ++Y   EE   R A + KN+ +I   N   R+G  S+ + +N F D + EEF++   G         K   +      P + DWRE G V+PVK+QG CGSCW FS TG+LE    +  G+ ISLSEQ LVDC+
Sbjct:   29 WTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS 170          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = 2
Query:  257 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGL----SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA 673
            + ++   + ++Y   EE   R A + KN+ +I   N++      S+ + +N F D + EEF++   G         K   +      P + DWRE G V+PVK+QG CGSCW FS TG+LE    +  GK +SLSEQ LVDC+
Sbjct:   29 WTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYSQGKHSFTMAMNTFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCS 170          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CYSP_PLAFA (Trophozoite cysteine proteinase OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 53/175 (30.29%), Postives = 87/175 (49.71%), Query Frame = 2
Query:  230 IGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNR--KGLSYRLGLNKFADWSWEE----------------------FQRHRLGAAQNCSATTKG--NHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQ 676
            I   ++A  F +F + + K+Y++++E   +F  F  N   I++ N+  K   Y+  +N+F+D+S EE                      F+ H           T G  N K     +PE  D+RE GIV   KDQG CGSCW F++ G++E+ + +     +S SEQ++VDC++
Sbjct:  216 INNIKYASKFFKFMKEHNKVYKNIDEQMRKFEIFKINYISIKNHNKLNKNAMYKKKVNQFSDYSEEELKEYFKTLLHVPNHMIEKYSKPFENHLKDNILISEFYTNGKRNEKDIFSKVPEILDYREKGIVHEPKDQGLCGSCWAFASVGNIESVFAKKNKNILSFSEQEVVDCSK 390          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 54/147 (36.73%), Postives = 73/147 (49.66%), Query Frame = 2
Query:  251 LSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV-------LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 670
            L F +F  +Y K Y S +E K R+  F  N++ I + N +  S    +N+FAD +  E      G A   S     N   T  V        P   DWR    V+ VKDQG CG+CW F+  G+LE+ Y   + + I L+EQQLVDC
Sbjct:   38 LYFEKFISQYNKQYSSEDEKKYRYNIFRHNIESINAKNSRNDSAVYKINRFADMTKNEVVNRHTGLA---SGDIGANFCETIVVDGPGQRQRPANFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLIDLAEQQLVDC 181          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 60/176 (34.09%), Postives = 91/176 (51.70%), Query Frame = 2
Query:  173 IRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYES--VEEMKLRFATFSKNLDLIRSTNRKGLS---YRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGN--HKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQ 676
            IR  +  G+R  E +  +   +A + L  AR  R  G    +  + E + RF  F  NL  + + N +      +RLG+N+FAD +  EF+   LG          G        + LP++ DWR+ G +V+PVK+QG CGSCW FS   ++E       G+ +SLSEQ+LV+CA+
Sbjct:   40 IRYNAEHGVRGLERTEAEA--RAAYDLWLARHRRGGGGGSRNGFIGEHERRFRVFWDNLKFVDAHNARADERGGFRLGMNRFADLTNGEFRATYLGTTPAGRGRRVGEAYRHDGVEALPDSVDWRDKGAVVAPVKNQGQCGSCWAFSAVAAVEGINKIVTGELVSLSEQELVECAR 213          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 55/142 (38.73%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  272 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNRK---GL-SYRLGLNKFADWSWEE----FQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA 673
            + YGK Y+   E  +R   + KNL  +   N +   G+ SY LG+N   D + EE        R+ +    + T K N      +LP++ DWRE G V+ VK QG CG+CW FS  G+LEA      GK +SLS Q LVDC+
Sbjct:   33 KTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMSSLRVPSQWQRNITYKSNPNR---ILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCS 171          
The following BLAST results are available for this feature:
BLAST of FC868938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
CATJ_RAT8.929e-1835.97Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CYSP2_HORVU1.166e-1740.15Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=E... [more]
BROM1_ANACO1.166e-1733.57Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]
CYSP1_HORVU1.523e-1740.15Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=E... [more]
CATL1_HUMAN1.523e-1737.76Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2[more]
CATL1_CERAE1.523e-1736.36Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]
CYSP_PLAFA2.598e-1730.29Trophozoite cysteine proteinase OS=Plasmodium falc... [more]
CATV_NPVMC4.431e-1736.73Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CYSP1_ORYSJ5.787e-1734.09Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
CATS_HUMAN7.559e-1738.73Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC31006G04EF AbioticL1 Citrus clementina cDNA clone C31006G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868938 ID=FC868938; Name=FC868938; organism=Citrus clementina; type=EST; length=685bp
TCGCCGGGGGCATTCATTTAATCCGAAGCCCTTGAGTGCGGTGCACTCTC
TCCAAACAAAACAGACACAATCATTAGGCATGGCTCGCCCTGAACATTTG
GTCTCGTCCATCATCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATC
AAGCTTCGACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCC
GTGACTTCGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCT
CTCTCCTTTGCCCGTTTTGCTCGCAGGTATGGAAAGATTTACGAGTCCGT
TGAGGAGATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAA
TCAGATCTACGAATCGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAG
TTTGCTGATTGGAGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGC
ACAAAACTGCTCTGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATG
TGCTTCCAGAAACGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTT
AAAGACCAAGGTCACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATC
TCTTGAGGCTGCTTACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAG
AACAGCAGCTTGTAGACTGTGCCCAAGCTTTNCAC
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