FC868952

Overview
NameFC868952
Unique NameFC868952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHO2_SCHPO (GTP-binding protein rho2 OS=Schizosaccharomyces pombe GN=rho2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.506e-25
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V VGDGA GKT +L  +T   FPT+YVPTVF+N+ ++  VDG +V L LWDTAGQE+Y RLRP+SY  A + ++ F++ S  S ENV+ KWI E
Sbjct:   10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEE 105          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHO4_SCHPO (GTP-binding protein rho4 OS=Schizosaccharomyces pombe GN=rho4 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.766e-24
Identity = 52/98 (53.06%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V VGDG  GKTC+LI ++S TFP  YVPTVF+N+  ++    +   + L LWDTAGQE+Y+RLRPLSY  ++V +L FS+   AS  NV +KW PE
Sbjct:   16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPE 113          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOC_EMENI (GTP-binding protein rhoC OS=Emericella nidulans GN=rhoC PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.718e-24
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V VGDG  GKTC+LISY+   FP  YVPTVF+N+    +    G TV L LWDTAGQE+Y+RLRPLSY   D+  + F++   AS ENV  KW PE
Sbjct:   71 KFVVVGDGGCGKTCLLISYSQGYFPEKYVPTVFENYITQTLHRRSGKTVELALWDTAGQEEYDRLRPLSYPETDLLFVCFAIDCPASLENVMDKWYPE 168          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOH_BOVIN (Rho-related GTP-binding protein RhoH OS=Bos taurus GN=RHOH PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.162e-24
Identity = 49/97 (50.52%), Postives = 70/97 (72.16%), Query Frame = 3
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IKCV VGD AVGKT +L+ +TS TFP  Y PTV++N   +V++DG  ++LGLWDTAG + +  +RPLSY+ ADV ++ +S+ +  S+ N+  KWI E
Sbjct:    5 IKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVLMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWIGE 101          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RACG_DICDI (Rho-related protein racG OS=Dictyostelium discoideum GN=racG PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.162e-24
Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = 3
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IK   VG+G +GKT ML+SYTSN+   +Y PTVFDN+S  ++ +    NL LWDTAGQE++++LR LSY   DVF+L FSLI+ +S+ N+   W+ E
Sbjct:    4 IKVCVVGEGGIGKTSMLLSYTSNSISNEYQPTVFDNYSTLLMHNKKPYNLSLWDTAGQEEFSKLRRLSYPQTDVFLLCFSLINPSSFSNILDSWVQE 100          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOH_MOUSE (Rho-related GTP-binding protein RhoH OS=Mus musculus GN=Rhoh PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.048e-24
Identity = 49/97 (50.52%), Postives = 69/97 (71.13%), Query Frame = 3
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IKCV VGD AVGKT +L+ +TS TFP  Y PTV++N   +V +DG  ++LGLWDTAG + +  +RPLSY+ ADV ++ +S+ +  S+ N+  KWI E
Sbjct:    5 IKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWISE 101          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOH_HUMAN (Rho-related GTP-binding protein RhoH OS=Homo sapiens GN=RHOH PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.051e-23
Identity = 49/97 (50.52%), Postives = 69/97 (71.13%), Query Frame = 3
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IKCV VGD AVGKT +L+ +TS TFP  Y PTV++N   +V +DG  ++LGLWDTAG + +  +RPLSY+ ADV ++ +S+ +  S+ N+  KWI E
Sbjct:    5 IKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWIGE 101          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOF_MOUSE (Rho-related GTP-binding protein RhoF OS=Mus musculus GN=Rhof PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.994e-23
Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  360 AQMSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            A  SA + +K V VGDG  GKT +L+ Y   +FP  Y P+VF+ ++A+V V    V L L+DTAGQEDY+RLRPLSY+   + ++ + +++  SY+NV  KW PE
Sbjct:   12 APSSARKELKIVIVGDGGCGKTSLLMVYCQGSFPEHYAPSVFEKYTASVTVGNKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPE 116          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHO4_ASHGO (GTP-binding protein RHO4 OS=Ashbya gossypii GN=RHO4 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.994e-23
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IK V VGDGA GKT +L+SYT   FP DYVPT+F+N+  N+    G  + L LWDTAGQE+Y+RLRPLSY   D+ ++ ++  ++ S  N  + W PE
Sbjct:   53 IKIVVVGDGATGKTSLLMSYTQGQFPEDYVPTIFENYVTNIEGPRGKVIELALWDTAGQEEYSRLRPLSYGDVDIVMVCYAADNRTSLTNAEELWFPE 150          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOF_BOVIN (Rho-related GTP-binding protein RhoF OS=Bos taurus GN=RHOF PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.162e-22
Identity = 47/102 (46.08%), Postives = 69/102 (67.65%), Query Frame = 3
Query:  369 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            S  + +K V VGDG  GKT +L+ Y+  +FP  Y P+VF+ ++A+V V    V L L+DTAGQEDY+RLRPLSY+   + ++ + +++  SY+NV  KW PE
Sbjct:   19 SGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASVTVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPE 120          
The following BLAST results are available for this feature:
BLAST of FC868952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 365
Match NameE-valueIdentityDescription
RHO2_SCHPO9.506e-2555.21GTP-binding protein rho2 OS=Schizosaccharomyces po... [more]
RHO4_SCHPO2.766e-2453.06GTP-binding protein rho4 OS=Schizosaccharomyces po... [more]
RHOC_EMENI4.718e-2455.10GTP-binding protein rhoC OS=Emericella nidulans GN... [more]
RHOH_BOVIN6.162e-2450.52Rho-related GTP-binding protein RhoH OS=Bos taurus... [more]
RACG_DICDI6.162e-2451.55Rho-related protein racG OS=Dictyostelium discoide... [more]
RHOH_MOUSE8.048e-2450.52Rho-related GTP-binding protein RhoH OS=Mus muscul... [more]
RHOH_HUMAN1.051e-2350.52Rho-related GTP-binding protein RhoH OS=Homo sapie... [more]
RHOF_MOUSE3.994e-2346.67Rho-related GTP-binding protein RhoF OS=Mus muscul... [more]
RHO4_ASHGO3.994e-2350.00GTP-binding protein RHO4 OS=Ashbya gossypii GN=RHO... [more]
RHOF_BOVIN1.162e-2246.08Rho-related GTP-binding protein RhoF OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionC31006H09EF AbioticL1 Citrus clementina cDNA clone C31006H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868952 ID=FC868952; Name=FC868952; organism=Citrus clementina; type=EST; length=674bp
GTTGGCTAGGTCAGCTAACATTTCAACCGCAAAGCGATTTCTTTCCCCTT
CTCTTTCCTCTCTCATTGGCCATCCCTCGCTTTCTTTTTTTGGTTGGCAT
TGTTGCTTTTCGCCGCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT
CTCTCTGCAGATTAGGGTTTAATTACCTTCGCTACCTTAATTCAAGACTT
CTTTTCACTCAATTCCTAAGCTCCCGTTGACGAACTGAGTTGTTCTCTTT
TAGTCTTCGAAATGAGTGAAGTCTGTGGCAAGAAGTGCACGTAAAGAACC
TGAGCAGTCTTCCAAGGGCATTGTCGGAATAAACTAAAAAAGAGAATAGA
GATCTGGTGGCGCAAATGAGCGCGTCGAGGTTCATAAAGTGCGTCACTGT
CGGTGACGGCGCCGTCGGAAAAACTTGCATGCTTATTTCTTACACCAGCA
ACACTTTCCCAACGGACTATGTGCCAACTGTCTTTGACAATTTCAGTGCG
AATGTGGTTGTTGATGGGAGTACGGTCAACTTAGGGTTATGGGACACTGC
TGGTCAGGAGGATTACAATAGATTGAGACCGTTAAGTTATAGAGGAGCTG
ATGTGTTTATTCTTGCATTCTCACTGATTAGCAAGGCCAGCTATGAAAAT
GTCGCCAAGAAGTGGATTCCAGAA
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