FC868952

Overview
NameFC868952
Unique NameFC868952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOD_HUMAN (Rho-related GTP-binding protein RhoD OS=Homo sapiens GN=RHOD PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.162e-22
Identity = 47/99 (47.47%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  378 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            R +K V VGDG  GKT +L+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ+DY+RLRPL Y  A V +L F + S  S++N+  +W PE
Sbjct:   16 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPE 114          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOF_HUMAN (Rho-related GTP-binding protein RhoF OS=Homo sapiens GN=RHOF PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.982e-22
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            +K V VGDG  GKT +L+ Y+  +FP  Y P+VF+ ++A+V V    V L L+DTAGQEDY+RLRPLSY+   + ++ + +++  SY+NV  KW PE
Sbjct:   20 LKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASVTVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPE 116          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHO3_SCHPO (GTP-binding protein rho3 OS=Schizosaccharomyces pombe GN=rho3 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.381e-22
Identity = 47/96 (48.96%), Postives = 67/96 (69.79%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V +GDGA GKT +L  +T   FP  Y PT+F+N+  ++ VDG+++ L LWDTAGQE+Y++LR LSY    V ++ F++ S+ S ENV  KW+PE
Sbjct:   15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPE 110          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOD_MOUSE (Rho-related GTP-binding protein RhoD OS=Mus musculus GN=Rhod PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.838e-22
Identity = 44/97 (45.36%), Postives = 66/97 (68.04%), Query Frame = 3
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            +K V VGDG  GKT +++ +    FP  Y PTVF+ ++A + + G  V+L +WDTAGQ+DY+RLRPL Y  A+V +L F + +  S++NV+ +W PE
Sbjct:   18 VKVVLVGDGGCGKTSLMMVFAKGAFPESYSPTVFERYNATLQMKGKPVHLQIWDTAGQDDYDRLRPLFYPDANVLLLCFDVTNPNSFDNVSNRWYPE 114          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHO3_YEAST (GTP-binding protein RHO3 OS=Saccharomyces cerevisiae GN=RHO3 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.423e-20
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V +GDGA GKT +L  +T   FP  Y PTVF+N+  ++ VD   + L LWDTAGQE+++RLR LSY      +L FS+ S+ S ENV  KW+ E
Sbjct:   18 KIVILGDGACGKTSLLNVFTRGYFPEVYEPTVFENYIHDIFVDSKHITLSLWDTAGQEEFDRLRSLSYSDTQCIMLCFSIDSRDSLENVQNKWVGE 113          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHO3_ASHGO (GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO3 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.423e-20
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V +GDGA GKT +L  +T   FP  Y PTVF+N+  ++ VD   + L LWDTAGQE+++RLR LSY      +L FS+ S+ S ENV  KW+ E
Sbjct:   17 KIVILGDGACGKTSLLNVFTRGYFPKVYEPTVFENYIHDIFVDNQHITLSLWDTAGQEEFDRLRSLSYSDTHTIMLCFSVDSRDSLENVKNKWVSE 112          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHO2_YEAST (GTP-binding protein RHO2 OS=Saccharomyces cerevisiae GN=RHO2 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.165e-20
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V +GDGA GKT +L  +T   FP  Y PTVF+N+  +  VDG  V+L LWDTAGQE+Y RLRP SY  AD+ ++ F++ +  S  N   KW  E
Sbjct:    9 KLVIIGDGACGKTSLLYVFTLGKFPEQYHPTVFENYVTDCRVDGIKVSLTLWDTAGQEEYERLRPFSYSKADIILIGFAVDNFESLINARTKWADE 104          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RACM_DICDI (Rho-related protein racM OS=Dictyostelium discoideum GN=racM PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.679e-19
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 3
Query:  384 IKCVTVGDGAVGKTCMLISYT-SNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IK VT+GD  VGKT +L++YT S +FP +YVPT  DNF     ++G   +L +WDTAG E Y+ LRPL Y   D+ +L F++ ++ S+ ++   WI E
Sbjct:    6 IKIVTIGDYGVGKTTLLMTYTASGSFPQEYVPTALDNFIHEATINGKKASLSIWDTAGGEYYHELRPLIYPETDILLLLFAIENRESFLHIKTNWITE 103          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHO3_SCHCO (GTP-binding protein Rho3 OS=Schizophyllum commune GN=RHO3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V  GDGA GKT +L  +T   F   Y PTVF+N+  ++ +D   V L LWDTAGQE+++RLR LSY    V ++ FS+ +  S ENV  KW+ E
Sbjct:   19 KVVVCGDGACGKTSLLNVFTRGFFTQVYEPTVFENYVHDLYIDDQLVELSLWDTAGQEEFDRLRSLSYAETHVIMICFSVDNPTSLENVESKWLDE 114          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RACI_DICDI (Rho-related protein racI OS=Dictyostelium discoideum GN=racI PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 39/98 (39.80%), Postives = 64/98 (65.31%), Query Frame = 3
Query:  381 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            +IK + +GD   GKT M+++Y++ +FPT YVP+  D  S ++  +    ++G WD++   +++  RP +Y   +V IL FS+ S  S+ENV+KKWIPE
Sbjct:    5 YIKLLVLGDSKTGKTTMMMTYSTGSFPTGYVPSHVDATSLDIEYNKQVCHVGFWDSSALAEFDNTRPSTYPNTNVIILCFSIDSPTSFENVSKKWIPE 102          
The following BLAST results are available for this feature:
BLAST of FC868952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 365
Match NameE-valueIdentityDescription
RHOD_HUMAN1.162e-2247.47Rho-related GTP-binding protein RhoD OS=Homo sapie... [more]
RHOF_HUMAN1.982e-2247.42Rho-related GTP-binding protein RhoF OS=Homo sapie... [more]
RHO3_SCHPO3.381e-2248.96GTP-binding protein rho3 OS=Schizosaccharomyces po... [more]
RHOD_MOUSE9.838e-2245.36Rho-related GTP-binding protein RhoD OS=Mus muscul... [more]
RHO3_YEAST2.423e-2048.96GTP-binding protein RHO3 OS=Saccharomyces cerevisi... [more]
RHO3_ASHGO2.423e-2048.96GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO... [more]
RHO2_YEAST3.165e-2048.96GTP-binding protein RHO2 OS=Saccharomyces cerevisi... [more]
RACM_DICDI2.679e-1944.90Rho-related protein racM OS=Dictyostelium discoide... [more]
RHO3_SCHCO1.330e-1846.88GTP-binding protein Rho3 OS=Schizophyllum commune ... [more]
RACI_DICDI6.599e-1839.80Rho-related protein racI OS=Dictyostelium discoide... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31006H09EF AbioticL1 Citrus clementina cDNA clone C31006H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868952 ID=FC868952; Name=FC868952; organism=Citrus clementina; type=EST; length=674bp
GTTGGCTAGGTCAGCTAACATTTCAACCGCAAAGCGATTTCTTTCCCCTT
CTCTTTCCTCTCTCATTGGCCATCCCTCGCTTTCTTTTTTTGGTTGGCAT
TGTTGCTTTTCGCCGCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT
CTCTCTGCAGATTAGGGTTTAATTACCTTCGCTACCTTAATTCAAGACTT
CTTTTCACTCAATTCCTAAGCTCCCGTTGACGAACTGAGTTGTTCTCTTT
TAGTCTTCGAAATGAGTGAAGTCTGTGGCAAGAAGTGCACGTAAAGAACC
TGAGCAGTCTTCCAAGGGCATTGTCGGAATAAACTAAAAAAGAGAATAGA
GATCTGGTGGCGCAAATGAGCGCGTCGAGGTTCATAAAGTGCGTCACTGT
CGGTGACGGCGCCGTCGGAAAAACTTGCATGCTTATTTCTTACACCAGCA
ACACTTTCCCAACGGACTATGTGCCAACTGTCTTTGACAATTTCAGTGCG
AATGTGGTTGTTGATGGGAGTACGGTCAACTTAGGGTTATGGGACACTGC
TGGTCAGGAGGATTACAATAGATTGAGACCGTTAAGTTATAGAGGAGCTG
ATGTGTTTATTCTTGCATTCTCACTGATTAGCAAGGCCAGCTATGAAAAT
GTCGCCAAGAAGTGGATTCCAGAA
back to top