FC868952

Overview
NameFC868952
Unique NameFC868952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868952_ssr119 microsatellite FC868952_ssr119:119..148. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9427 contig Ccv1_Contig9427:1..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RAC1_BOVIN (Ras-related C3 botulinum toxin substrate 1 OS=Bos taurus GN=RAC1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.976e-39
Identity = 73/97 (75.26%), Postives = 84/97 (86.60%), Query Frame = 3 
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE 100
[Close]
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RAC2_MOUSE (Ras-related C3 botulinum toxin substrate 2 OS=Mus musculus GN=Rac2 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.192e-39
Identity = 73/97 (75.26%), Postives = 83/97 (85.57%), Query Frame = 3 
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE 100
[Close]
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RAC2_HUMAN (Ras-related C3 botulinum toxin substrate 2 OS=Homo sapiens GN=RAC2 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.192e-39
Identity = 73/97 (75.26%), Postives = 83/97 (85.57%), Query Frame = 3 
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE 100
[Close]
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RAC2_BOVIN (Ras-related C3 botulinum toxin substrate 2 OS=Bos taurus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.192e-39
Identity = 73/97 (75.26%), Postives = 83/97 (85.57%), Query Frame = 3 
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE 100
[Close]
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RAC1C_DICDI (Rho-related protein rac1C OS=Dictyostelium discoideum GN=rac1C PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 8.857e-39
Identity = 72/97 (74.23%), Postives = 85/97 (87.63%), Query Frame = 3 
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS+IS +SYENV+ KW PE
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSYENVSGKWGPE 100
[Close]
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RAC1B_DICDI (Rho-related protein rac1B OS=Dictyostelium discoideum GN=rac1B PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.577e-38
Identity = 71/97 (73.20%), Postives = 84/97 (86.60%), Query Frame = 3 
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS++S AS+ENV  KW PE
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPASFENVNGKWHPE 100
[Close]
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RAC2_DROME (Ras-related protein Rac2 OS=Drosophila melanogaster GN=Rac2 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.395e-38
Identity = 70/97 (72.16%), Postives = 83/97 (85.57%), Query Frame = 3 
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   +NLGLWDTAGQEDY+RLRPLSY   DVF++ FSL++ AS+ENV  KW PE
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWFPE 100
[Close]
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RAC1A_DICDI (Rho-related protein rac1A OS=Dictyostelium discoideum GN=rac1A PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.395e-38
Identity = 71/97 (73.20%), Postives = 84/97 (86.60%), Query Frame = 3 
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS+IS +S+ENV  KW PE
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSFENVNGKWHPE 100
[Close]
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RAC1_DROME (Ras-related protein Rac1 OS=Drosophila melanogaster GN=Rac1 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 5.741e-38
Identity = 70/97 (72.16%), Postives = 83/97 (85.57%), Query Frame = 3 
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   +NLGLWDTAGQEDY+RLRPLSY   DVF++ FSL++ AS+ENV  KW PE
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPE 100
[Close]
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RACB_DICDI (Rho-related protein racB OS=Dictyostelium discoideum GN=racB PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.792e-38
Identity = 72/97 (74.23%), Postives = 84/97 (86.60%), Query Frame = 3 
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IK V VGDGAVGKTC+LISYTSN+FPT+YVPTVFDN+SANV+VD  TV+LGLWDTAGQEDY+RLRPLSY   DVF++ F++IS+ SY NV  KW PE
Sbjct:    4 IKLVVVGDGAVGKTCLLISYTSNSFPTEYVPTVFDNYSANVMVDNKTVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICFAIISQTSYTNVKSKWWPE 100
The following BLAST results are available for this feature:
BLAST of FC868952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 365
Match NameE-valueIdentityDescription
RAC1_BOVIN3.976e-3975.26Ras-related C3 botulinum toxin substrate 1 OS=Bos ... [more]
RAC2_MOUSE5.192e-3975.26Ras-related C3 botulinum toxin substrate 2 OS=Mus ... [more]
RAC2_HUMAN5.192e-3975.26Ras-related C3 botulinum toxin substrate 2 OS=Homo... [more]
RAC2_BOVIN5.192e-3975.26Ras-related C3 botulinum toxin substrate 2 OS=Bos ... [more]
RAC1C_DICDI8.857e-3974.23Rho-related protein rac1C OS=Dictyostelium discoid... [more]
RAC1B_DICDI2.577e-3873.20Rho-related protein rac1B OS=Dictyostelium discoid... [more]
RAC2_DROME4.395e-3872.16Ras-related protein Rac2 OS=Drosophila melanogaste... [more]
RAC1A_DICDI4.395e-3873.20Rho-related protein rac1A OS=Dictyostelium discoid... [more]
RAC1_DROME5.741e-3872.16Ras-related protein Rac1 OS=Drosophila melanogaste... [more]
RACB_DICDI9.792e-3874.23Rho-related protein racB OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionC31006H09EF AbioticL1 Citrus clementina cDNA clone C31006H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868952 ID=FC868952; Name=FC868952; organism=Citrus clementina; type=EST; length=674bp
GTTGGCTAGGTCAGCTAACATTTCAACCGCAAAGCGATTTCTTTCCCCTT
CTCTTTCCTCTCTCATTGGCCATCCCTCGCTTTCTTTTTTTGGTTGGCAT
TGTTGCTTTTCGCCGCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT
CTCTCTGCAGATTAGGGTTTAATTACCTTCGCTACCTTAATTCAAGACTT
CTTTTCACTCAATTCCTAAGCTCCCGTTGACGAACTGAGTTGTTCTCTTT
TAGTCTTCGAAATGAGTGAAGTCTGTGGCAAGAAGTGCACGTAAAGAACC
TGAGCAGTCTTCCAAGGGCATTGTCGGAATAAACTAAAAAAGAGAATAGA
GATCTGGTGGCGCAAATGAGCGCGTCGAGGTTCATAAAGTGCGTCACTGT
CGGTGACGGCGCCGTCGGAAAAACTTGCATGCTTATTTCTTACACCAGCA
ACACTTTCCCAACGGACTATGTGCCAACTGTCTTTGACAATTTCAGTGCG
AATGTGGTTGTTGATGGGAGTACGGTCAACTTAGGGTTATGGGACACTGC
TGGTCAGGAGGATTACAATAGATTGAGACCGTTAAGTTATAGAGGAGCTG
ATGTGTTTATTCTTGCATTCTCACTGATTAGCAAGGCCAGCTATGAAAAT
GTCGCCAAGAAGTGGATTCCAGAA
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