FC868952

Overview
NameFC868952
Unique NameFC868952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RACC_DICDI (Rho-related protein racC OS=Dictyostelium discoideum GN=racC PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.618e-32
Identity = 61/103 (59.22%), Postives = 78/103 (75.73%), Query Frame = 3
Query:  366 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            MSA+  IK V +GDGAVGKTC+LISY +N FP DY+PTVFDN+  N+      + LGLWDTAGQE+Y++LRPLSY  A+VF++ FS+ +  S+ENV  KW PE
Sbjct:    1 MSAAEVIKLVVIGDGAVGKTCLLISYANNRFPEDYIPTVFDNYVVNLTAGDRNIELGLWDTAGQEEYDKLRPLSYANANVFLICFSITNPVSFENVYTKWYPE 103          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOJ_MOUSE (Rho-related GTP-binding protein RhoJ OS=Mus musculus GN=Rhoj PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.604e-32
Identity = 60/100 (60.00%), Postives = 80/100 (80.00%), Query Frame = 3
Query:  375 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            +R +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++  V V G    LGL+DTAGQEDYN+LRPLSY   DVF++ FS+++ ASY NV ++W+PE
Sbjct:   19 NRILKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPE 118          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOJ_HUMAN (Rho-related GTP-binding protein RhoJ OS=Homo sapiens GN=RHOJ PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.049e-31
Identity = 59/99 (59.60%), Postives = 79/99 (79.80%), Query Frame = 3
Query:  378 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            + +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++  V V G    LGL+DTAGQEDYN+LRPLSY   DVF++ FS+++ ASY NV ++W+PE
Sbjct:   20 KMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPE 118          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RAC2_CAEEL (Ras-related protein rac-2 OS=Caenorhabditis elegans GN=rac-2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.336e-31
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IKCV VGDGAVGKTC+L+SYT+N FP +Y+ TVFD +S NV+VDG  +NL LWDTAGQ+DY++ R LS+   DVF++ F+L + AS+ENV  KW PE
Sbjct:    4 IKCVVVGDGAVGKTCLLLSYTTNAFPGEYILTVFDTYSTNVMVDGRPINLSLWDTAGQDDYDQFRHLSFPQTDVFLVCFALNNPASFENVRAKWYPE 100          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOU_HUMAN (Rho-related GTP-binding protein RhoU OS=Homo sapiens GN=RHOU PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.985e-31
Identity = 58/99 (58.59%), Postives = 81/99 (81.82%), Query Frame = 3
Query:  378 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            R +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ+++++LRPL Y   D+F+L FS++S +S++NV++KW+PE
Sbjct:   48 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPE 146          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOQ_RAT (Rho-related GTP-binding protein RhoQ OS=Rattus norvegicus GN=Rhoq PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.985e-31
Identity = 58/97 (59.79%), Postives = 80/97 (82.47%), Query Frame = 3
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PE
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE 106          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOQ_MOUSE (Rho-related GTP-binding protein RhoQ OS=Mus musculus GN=Rhoq PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.985e-31
Identity = 58/97 (59.79%), Postives = 80/97 (82.47%), Query Frame = 3
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PE
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE 106          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOQ_HUMAN (Rho-related GTP-binding protein RhoQ OS=Homo sapiens GN=RHOQ PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.985e-31
Identity = 58/97 (59.79%), Postives = 80/97 (82.47%), Query Frame = 3
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PE
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE 106          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOU_MOUSE (Rho-related GTP-binding protein RhoU OS=Mus musculus GN=Rhou PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.797e-31
Identity = 58/99 (58.59%), Postives = 79/99 (79.80%), Query Frame = 3
Query:  378 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            R +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ+++++LRPL Y   D+F+L FS++S  S++NV +KW+PE
Sbjct:   51 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPTSFQNVGEKWVPE 149          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOU_BOVIN (Rho-related GTP-binding protein RhoU OS=Bos taurus GN=RHOU PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.797e-31
Identity = 57/97 (58.76%), Postives = 80/97 (82.47%), Query Frame = 3
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ+++++LRPL Y  AD+F+L FS++  +S++NV++KW+PE
Sbjct:   47 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVKLQLCDTAGQDEFDKLRPLCYTNADIFLLCFSVVGPSSFQNVSEKWVPE 143          
The following BLAST results are available for this feature:
BLAST of FC868952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 365
Match NameE-valueIdentityDescription
RACC_DICDI1.618e-3259.22Rho-related protein racC OS=Dictyostelium discoide... [more]
RHOJ_MOUSE3.604e-3260.00Rho-related GTP-binding protein RhoJ OS=Mus muscul... [more]
RHOJ_HUMAN1.049e-3159.60Rho-related GTP-binding protein RhoJ OS=Homo sapie... [more]
RAC2_CAEEL2.336e-3161.86Ras-related protein rac-2 OS=Caenorhabditis elegan... [more]
RHOU_HUMAN3.985e-3158.59Rho-related GTP-binding protein RhoU OS=Homo sapie... [more]
RHOQ_RAT3.985e-3159.79Rho-related GTP-binding protein RhoQ OS=Rattus nor... [more]
RHOQ_MOUSE3.985e-3159.79Rho-related GTP-binding protein RhoQ OS=Mus muscul... [more]
RHOQ_HUMAN3.985e-3159.79Rho-related GTP-binding protein RhoQ OS=Homo sapie... [more]
RHOU_MOUSE6.797e-3158.59Rho-related GTP-binding protein RhoU OS=Mus muscul... [more]
RHOU_BOVIN6.797e-3158.76Rho-related GTP-binding protein RhoU OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionC31006H09EF AbioticL1 Citrus clementina cDNA clone C31006H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868952 ID=FC868952; Name=FC868952; organism=Citrus clementina; type=EST; length=674bp
GTTGGCTAGGTCAGCTAACATTTCAACCGCAAAGCGATTTCTTTCCCCTT
CTCTTTCCTCTCTCATTGGCCATCCCTCGCTTTCTTTTTTTGGTTGGCAT
TGTTGCTTTTCGCCGCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT
CTCTCTGCAGATTAGGGTTTAATTACCTTCGCTACCTTAATTCAAGACTT
CTTTTCACTCAATTCCTAAGCTCCCGTTGACGAACTGAGTTGTTCTCTTT
TAGTCTTCGAAATGAGTGAAGTCTGTGGCAAGAAGTGCACGTAAAGAACC
TGAGCAGTCTTCCAAGGGCATTGTCGGAATAAACTAAAAAAGAGAATAGA
GATCTGGTGGCGCAAATGAGCGCGTCGAGGTTCATAAAGTGCGTCACTGT
CGGTGACGGCGCCGTCGGAAAAACTTGCATGCTTATTTCTTACACCAGCA
ACACTTTCCCAACGGACTATGTGCCAACTGTCTTTGACAATTTCAGTGCG
AATGTGGTTGTTGATGGGAGTACGGTCAACTTAGGGTTATGGGACACTGC
TGGTCAGGAGGATTACAATAGATTGAGACCGTTAAGTTATAGAGGAGCTG
ATGTGTTTATTCTTGCATTCTCACTGATTAGCAAGGCCAGCTATGAAAAT
GTCGCCAAGAAGTGGATTCCAGAA
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