FC868952

Overview
NameFC868952
Unique NameFC868952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868952_ssr119 microsatellite FC868952_ssr119:119..148. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9427 contig Ccv1_Contig9427:1..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOB_BOVIN (Rho-related GTP-binding protein RhoB OS=Bos taurus GN=RHOB PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.417e-28
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPE 102          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHO_DISOM (Ras-like GTP-binding protein O-RHO OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 102          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHO_APLCA (Ras-like GTP-binding protein RHO OS=Aplysia californica GN=RHO PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 102          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOV_RAT (Rho-related GTP-binding protein RhoV OS=Rattus norvegicus GN=Rhov PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 3
Query:  384 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            IKCV VGDGAVGK+ +++SYT N +P+ Y PT  D FS  V+VDG+ V + LWDTAGQED++RLR L Y   DVF+  FS++  +S++N+ +KW+PE
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPSRYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPE 128          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOC_PONAB (Rho-related GTP-binding protein RhoC OS=Pongo abelii GN=RHOC PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 102          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOC_MOUSE (Rho-related GTP-binding protein RhoC OS=Mus musculus GN=Rhoc PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 102          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOC_HUMAN (Rho-related GTP-binding protein RhoC OS=Homo sapiens GN=RHOC PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 102          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOC_CHICK (Rho-related GTP-binding protein RhoC OS=Gallus gallus GN=RHOC PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 102          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOC_BOVIN (Rho-related GTP-binding protein RhoC OS=Bos taurus GN=RHOC PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 102          
BLAST of FC868952 vs. ExPASy Swiss-Prot
Match: RHOA_RAT (Transforming protein RhoA OS=Rattus norvegicus GN=Rhoa PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 3
Query:  387 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 674
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 102          
The following BLAST results are available for this feature:
BLAST of FC868952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 365
Match NameE-valueIdentityDescription
RHOB_BOVIN2.417e-2859.38Rho-related GTP-binding protein RhoB OS=Bos taurus... [more]
RHO_DISOM7.034e-2859.38Ras-like GTP-binding protein O-RHO OS=Discopyge om... [more]
RHO_APLCA7.034e-2859.38Ras-like GTP-binding protein RHO OS=Aplysia califo... [more]
RHOV_RAT7.034e-2854.64Rho-related GTP-binding protein RhoV OS=Rattus nor... [more]
RHOC_PONAB7.034e-2859.38Rho-related GTP-binding protein RhoC OS=Pongo abel... [more]
RHOC_MOUSE7.034e-2859.38Rho-related GTP-binding protein RhoC OS=Mus muscul... [more]
RHOC_HUMAN7.034e-2859.38Rho-related GTP-binding protein RhoC OS=Homo sapie... [more]
RHOC_CHICK7.034e-2859.38Rho-related GTP-binding protein RhoC OS=Gallus gal... [more]
RHOC_BOVIN7.034e-2859.38Rho-related GTP-binding protein RhoC OS=Bos taurus... [more]
RHOA_RAT7.034e-2859.38Transforming protein RhoA OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31006H09EF AbioticL1 Citrus clementina cDNA clone C31006H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868952 ID=FC868952; Name=FC868952; organism=Citrus clementina; type=EST; length=674bp
GTTGGCTAGGTCAGCTAACATTTCAACCGCAAAGCGATTTCTTTCCCCTT
CTCTTTCCTCTCTCATTGGCCATCCCTCGCTTTCTTTTTTTGGTTGGCAT
TGTTGCTTTTCGCCGCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT
CTCTCTGCAGATTAGGGTTTAATTACCTTCGCTACCTTAATTCAAGACTT
CTTTTCACTCAATTCCTAAGCTCCCGTTGACGAACTGAGTTGTTCTCTTT
TAGTCTTCGAAATGAGTGAAGTCTGTGGCAAGAAGTGCACGTAAAGAACC
TGAGCAGTCTTCCAAGGGCATTGTCGGAATAAACTAAAAAAGAGAATAGA
GATCTGGTGGCGCAAATGAGCGCGTCGAGGTTCATAAAGTGCGTCACTGT
CGGTGACGGCGCCGTCGGAAAAACTTGCATGCTTATTTCTTACACCAGCA
ACACTTTCCCAACGGACTATGTGCCAACTGTCTTTGACAATTTCAGTGCG
AATGTGGTTGTTGATGGGAGTACGGTCAACTTAGGGTTATGGGACACTGC
TGGTCAGGAGGATTACAATAGATTGAGACCGTTAAGTTATAGAGGAGCTG
ATGTGTTTATTCTTGCATTCTCACTGATTAGCAAGGCCAGCTATGAAAAT
GTCGCCAAGAAGTGGATTCCAGAA
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