FC868956

Overview
NameFC868956
Unique NameFC868956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33
Identity = 71/139 (51.08%), Postives = 92/139 (66.19%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL-RHLRAVSTEDATAFAE 651
            DYD L K++L+GDSGVGKS LL RFT + F+    +T G++F  + +  D K+VK QIWDTAGQER+R ITSAYYRGA G +LVYD+T   +F NV  W++ +  H   N+  +LVGNK DL    R VS     A A+
Sbjct:    9 DYDALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALAD 147          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33
Identity = 70/139 (50.36%), Postives = 96/139 (69.06%), Query Frame = 1
Query:  235 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE 651
            ++YDYLFK++LIGDS VGKS LL RF  + +     ST GV+F  R+I  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYD T   +F NV++WL E+  + + ++  +L+GNK D+   + VSTE   A A+
Sbjct:    3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALAD 141          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33
Identity = 63/141 (44.68%), Postives = 97/141 (68.79%), Query Frame = 1
Query:  241 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            YD+LFK++LIGDSGVGK+ L+ RF  + F+    ST G++F  R++  + K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +FEN++ W+K ++++  + +  +L+GNK D+   R V  E A   A    +
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRI 145          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.963e-33
Identity = 70/139 (50.36%), Postives = 97/139 (69.78%), Query Frame = 1
Query:  235 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE 651
            +++DYLFK++LIGDS VGKS  L RF  + +     ST GV+F  R++  + K VK QIWDTAGQER+R ITS+YYRGA G ++VYD+T   +F NV++WL E+  + + ++  +LVGNK DL   RAV T  A A+A+
Sbjct:    3 NEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQ 141          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.963e-33
Identity = 66/137 (48.18%), Postives = 93/137 (67.88%), Query Frame = 1
Query:  241 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE 651
            YDYL K++LIGDSGVGKS LL RF+ + F+    +T G++F  R+I  + K +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+  W++ +  H   ++  ML+GNK D+   + V +    + A+
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLAD 148          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33
Identity = 63/136 (46.32%), Postives = 96/136 (70.59%), Query Frame = 1
Query:  241 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA 648
            YD+LFK++LIGDSGVGK+ L+ RF  + F+    ST G++F  R++  + K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +FEN++ W+K ++++  + +  +L+GNK D+   R V  E A   A
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLA 140          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33
Identity = 63/136 (46.32%), Postives = 96/136 (70.59%), Query Frame = 1
Query:  241 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA 648
            YD+LFK++LIGDSGVGK+ L+ RF  + F+    ST G++F  R++  + K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +FEN++ W+K ++++  + +  +L+GNK D+   R V  E A   A
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLA 140          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33
Identity = 63/136 (46.32%), Postives = 96/136 (70.59%), Query Frame = 1
Query:  241 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA 648
            YD+LFK++LIGDSGVGK+ L+ RF  + F+    ST G++F  R++  + K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +FEN++ W+K ++++  + +  +L+GNK D+   R V  E A   A
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLA 140          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.348e-33
Identity = 72/138 (52.17%), Postives = 95/138 (68.84%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE 651
            +YDYLFK++LIGDSGVGKS LL RF  + ++    ST GV+F  R+I  D K VK QIWDTAGQER+R ITS+YYRGA G  +VYDVT   +F NV++WL+E+  +    +  +LVGNK+D+   + V    A  FA+
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFAD 141          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 73/146 (50.00%), Postives = 97/146 (66.44%), Query Frame = 1
Query:  235 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA-ERETLFL 669
            + YD+LFK ++IG++G GKS LL +F   +F  +S  T GVEF ++ I    K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIVI+L GNK DL   R V+  +A+ FA E E +FL
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFL 148          
The following BLAST results are available for this feature:
BLAST of FC868956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTV2_VOLCA1.503e-3351.08GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RABD1_ARATH1.503e-3350.36Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB13_MOUSE1.503e-3344.68Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
YPTM1_MAIZE1.963e-3350.36GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB8A_DICDI1.963e-3348.18Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB13_MESAU2.563e-3346.32Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB13_HUMAN2.563e-3346.32Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN2.563e-3346.32Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
YPT1_NEUCR3.348e-3352.17GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB4A_RAT5.711e-3350.00Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC31007A02EF AbioticL1 Citrus clementina cDNA clone C31007A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868956 ID=FC868956; Name=FC868956; organism=Citrus clementina; type=EST; length=682bp
GAGGGACAAACAAACCCCTCGTTCCAATTTACAAAGTAGAAACAAAGAAA
ACAAACGAAACAAAAACGTGCTCGTTTGACACTAAAAACTATTAAATCCC
AAAACCCGCTCGTGTTTTACGTTTTTGTAGAAGCATTTATTAAAATCTCT
TTCGCGTCAGATGATCTGCTAATCCCAAAAAAAATTAACACATAAGAGAA
CACAAAAAGAGAAATGGGTGCGTACAGAGCGGACGATGACTATGATTATT
TGTTCAAGGTGGTTTTGATCGGCGACTCCGGCGTCGGAAAATCGAACCTT
TTGTCCAGGTTCACACGCAACGAGTTTAGCCTCGAATCAAAGTCCACCAC
TGGCGTCGAGTTTGCTACTCGGAGTATCCGTTGTGATGATAAGATCGTCA
AGGCTCAGATTTGGGATACCGCCGGCCAAGAAAGGTATCGTGCAATCACA
AGTGCATACTATCGAGGGGCTGTTGGTGCTTTGCTGGTCTATGATGTCAC
ACGTCATGTTACATTTGAAAATGTAGAGCGATGGCTGAAGGAGCTCCGAG
ATCACACAGATTCAAACATTGTGATCATGCTTGTTGGTAACAAAGCAGAT
CTGCGCCACCTGAGAGCAGTTTCCACTGAAGATGCCACAGCTTTTGCAGA
ACGAGAAACACTTTTTTTATGGAAACATCTGC
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