FC868956

Overview
NameFC868956
Unique NameFC868956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 6.683e-66
Identity = 122/144 (84.72%), Postives = 134/144 (93.06%), Query Frame = 1
Query:  232 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKST GVEFATRSI+ D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A AFAE+  L
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGL 148          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.729e-66
Identity = 121/144 (84.03%), Postives = 134/144 (93.06%), Query Frame = 1
Query:  232 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKST GVEFATRSI+ D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH D+NIVIMLVGNK+DLRHLRAV T++A AFAE+  L
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL 148          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.729e-66
Identity = 119/151 (78.81%), Postives = 136/151 (90.07%), Query Frame = 1
Query:  214 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETLF 666
            M  YRAD++YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKST GVEFAT++ + + K+VKAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRH TFEN  RWL+ELR HTD NIV+ML+GNK DLRHL AV TE+A AFAERE+L+
Sbjct:    1 MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLY 151          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.170e-64
Identity = 119/148 (80.41%), Postives = 134/148 (90.54%), Query Frame = 1
Query:  220 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            A R D++YDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKST GVEFATR+++ + + VKAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  TFENV RWLKELRDH DSNIVIML+GNK DL+HLRAV+TEDA ++AE+E L
Sbjct:    2 ARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGL 149          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.483e-62
Identity = 115/148 (77.70%), Postives = 131/148 (88.51%), Query Frame = 1
Query:  220 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            A R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKST GVEFATR+++ + K VKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV+RWL+ELRDH DSNIVIM+ GNK+DL+HLRAVS ED  A AE+E L
Sbjct:    2 ANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGL 149          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.704e-61
Identity = 113/148 (76.35%), Postives = 131/148 (88.51%), Query Frame = 1
Query:  220 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            A+R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKST GVEFATR+++ + K VKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV+RWL+ELRDH DSNIVIM+ GNK+DL HLRAVS +D  A +E+E L
Sbjct:    2 AHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGL 149          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.480e-60
Identity = 113/144 (78.47%), Postives = 127/144 (88.19%), Query Frame = 1
Query:  232 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            +D+YDYLFK VLIGDSGVGKSNLL RFTRNEF++ESKST GVEFATR+I  D+K +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+T+  +F+NV RWLKELR+H DSNIVIMLVGNK DL HLRAVSTE+A AFA    L
Sbjct:    4 EDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNL 147          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 230.335 bits (586), Expect = 7.157e-60
Identity = 110/147 (74.83%), Postives = 128/147 (87.07%), Query Frame = 1
Query:  223 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            +R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKST GVEFATR+ + + K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV RWL+ELRDH DSNIVIM+ GNK+DL HLR+V+ ED  + AE+E L
Sbjct:    3 HRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGL 149          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.082e-59
Identity = 111/148 (75.00%), Postives = 129/148 (87.16%), Query Frame = 1
Query:  220 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            A R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKST GVEFATR+++ + K VKAQIWDTAGQERYRAITSAYYRGAVGALL YD+T+  TF+NV+RWL+ELRDH DSNIVI+L GNK+DL+HLRAVS +D  A  ++E L
Sbjct:    2 ANRVDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGL 149          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 6.059e-59
Identity = 109/147 (74.15%), Postives = 129/147 (87.76%), Query Frame = 1
Query:  226 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETLF 666
            R D +Y YLFK+VLIGDSGVGKSN+LSRFTRN FSL+SKST GVEFAT+S++ + K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  +F+NV RWL+ELRDH DS+IVIM+VGNK+DL HLRAVS ++  A AE+E LF
Sbjct:    4 RVDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLF 150          
The following BLAST results are available for this feature:
BLAST of FC868956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_BOVIN6.683e-6684.72Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RB11B_DISOM8.729e-6684.03Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RAA1A_ARATH8.729e-6678.81Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RAA2A_ARATH8.170e-6480.41Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB2BV_BETVU4.483e-6277.70Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11C_LOTJA1.704e-6176.35Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
YPT3_SCHPO5.480e-6078.47GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAA2C_ARATH7.157e-6074.83Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11A_TOBAC2.082e-5975.00Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RGP2_ORYSJ6.059e-5974.15Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionC31007A02EF AbioticL1 Citrus clementina cDNA clone C31007A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868956 ID=FC868956; Name=FC868956; organism=Citrus clementina; type=EST; length=682bp
GAGGGACAAACAAACCCCTCGTTCCAATTTACAAAGTAGAAACAAAGAAA
ACAAACGAAACAAAAACGTGCTCGTTTGACACTAAAAACTATTAAATCCC
AAAACCCGCTCGTGTTTTACGTTTTTGTAGAAGCATTTATTAAAATCTCT
TTCGCGTCAGATGATCTGCTAATCCCAAAAAAAATTAACACATAAGAGAA
CACAAAAAGAGAAATGGGTGCGTACAGAGCGGACGATGACTATGATTATT
TGTTCAAGGTGGTTTTGATCGGCGACTCCGGCGTCGGAAAATCGAACCTT
TTGTCCAGGTTCACACGCAACGAGTTTAGCCTCGAATCAAAGTCCACCAC
TGGCGTCGAGTTTGCTACTCGGAGTATCCGTTGTGATGATAAGATCGTCA
AGGCTCAGATTTGGGATACCGCCGGCCAAGAAAGGTATCGTGCAATCACA
AGTGCATACTATCGAGGGGCTGTTGGTGCTTTGCTGGTCTATGATGTCAC
ACGTCATGTTACATTTGAAAATGTAGAGCGATGGCTGAAGGAGCTCCGAG
ATCACACAGATTCAAACATTGTGATCATGCTTGTTGGTAACAAAGCAGAT
CTGCGCCACCTGAGAGCAGTTTCCACTGAAGATGCCACAGCTTTTGCAGA
ACGAGAAACACTTTTTTTATGGAAACATCTGC
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