FC868956

Overview
NameFC868956
Unique NameFC868956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9428 contig Ccv1_Contig9428:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-38
Identity = 77/141 (54.61%), Postives = 96/141 (68.09%), Query Frame = 1
Query:  241 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            Y YLFK ++IGD+GVGKS LL +FT   F      T GVEF  R +  D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H+ SN+VIML+GNK+DL   R V  E+  AFA    L
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL 143          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 75/150 (50.00%), Postives = 104/150 (69.33%), Query Frame = 1
Query:  226 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETLFLWK 675
            R    Y++LFK +++GDS VGKSNLL +F    F+  S  T GVEF +RSI  +DK +K QIWDTAGQE++R+IT AYYRGAV A++VYD+TR  +FE++  WL + R  +  ++  +L+GNKADL   R VST +A  FAE+  L  ++
Sbjct:   16 RKSTSYEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFE 165          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37
Identity = 75/142 (52.82%), Postives = 99/142 (69.72%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            +Y Y+FK ++IGD GVGKS LL +FT  +F  +   T GVEF TR I    + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+ E+A  FAE   L
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL 148          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37
Identity = 75/142 (52.82%), Postives = 99/142 (69.72%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            +Y Y+FK ++IGD GVGKS LL +FT  +F  +   T GVEF TR I    + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+ E+A  FAE   L
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL 148          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37
Identity = 75/142 (52.82%), Postives = 99/142 (69.72%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            +Y Y+FK ++IGD GVGKS LL +FT  +F  +   T GVEF TR I    + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+ E+A  FAE   L
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL 148          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37
Identity = 75/142 (52.82%), Postives = 99/142 (69.72%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            +Y Y+FK ++IGD GVGKS LL +FT  +F  +   T GVEF TR I    + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+ E+A  FAE   L
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL 148          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37
Identity = 75/142 (52.82%), Postives = 99/142 (69.72%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            +Y Y+FK ++IGD GVGKS LL +FT  +F  +   T GVEF TR I    + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+ E+A  FAE   L
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL 148          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37
Identity = 75/142 (52.82%), Postives = 99/142 (69.72%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            +Y Y+FK ++IGD GVGKS LL +FT  +F  +   T GVEF TR I    + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+ E+A  FAE   L
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL 148          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.991e-37
Identity = 74/138 (53.62%), Postives = 101/138 (73.19%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE 651
            +YDYLFK++LIGDSGVGKS LL RF  + ++    ST GV+F  R+I  D KI+K QIWDTAGQER+R ITS+YYRGA G ++VYDVT HV+F NV++W++E++ +   ++  +LVGNK DL   + V T  A  +A+
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYAD 141          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 8.514e-37
Identity = 74/141 (52.48%), Postives = 98/141 (69.50%), Query Frame = 1
Query:  241 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            Y +LFK ++IGD+GVGKS LL +FT   F      T GVEF  R I  D+K +K QIWDTAGQE +R+IT +YYRG+ GALLVYD+TR  TF ++  WLK+ R + +SN+ I+L+GNK+D+   RAVS E+   FA+   L
Sbjct:    2 YSFLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGL 142          
The following BLAST results are available for this feature:
BLAST of FC868956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2B_HUMAN5.896e-3854.61Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2B_DICDI7.700e-3850.00Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB14_RAT1.715e-3752.82Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB1.715e-3752.82Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG1.715e-3752.82Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE1.715e-3752.82Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN1.715e-3752.82Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK1.715e-3752.82Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RAB1B_DICDI4.991e-3753.62Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB2A_DICDI8.514e-3752.48Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionC31007A02EF AbioticL1 Citrus clementina cDNA clone C31007A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868956 ID=FC868956; Name=FC868956; organism=Citrus clementina; type=EST; length=682bp
GAGGGACAAACAAACCCCTCGTTCCAATTTACAAAGTAGAAACAAAGAAA
ACAAACGAAACAAAAACGTGCTCGTTTGACACTAAAAACTATTAAATCCC
AAAACCCGCTCGTGTTTTACGTTTTTGTAGAAGCATTTATTAAAATCTCT
TTCGCGTCAGATGATCTGCTAATCCCAAAAAAAATTAACACATAAGAGAA
CACAAAAAGAGAAATGGGTGCGTACAGAGCGGACGATGACTATGATTATT
TGTTCAAGGTGGTTTTGATCGGCGACTCCGGCGTCGGAAAATCGAACCTT
TTGTCCAGGTTCACACGCAACGAGTTTAGCCTCGAATCAAAGTCCACCAC
TGGCGTCGAGTTTGCTACTCGGAGTATCCGTTGTGATGATAAGATCGTCA
AGGCTCAGATTTGGGATACCGCCGGCCAAGAAAGGTATCGTGCAATCACA
AGTGCATACTATCGAGGGGCTGTTGGTGCTTTGCTGGTCTATGATGTCAC
ACGTCATGTTACATTTGAAAATGTAGAGCGATGGCTGAAGGAGCTCCGAG
ATCACACAGATTCAAACATTGTGATCATGCTTGTTGGTAACAAAGCAGAT
CTGCGCCACCTGAGAGCAGTTTCCACTGAAGATGCCACAGCTTTTGCAGA
ACGAGAAACACTTTTTTTATGGAAACATCTGC
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