FC868956

Overview
NameFC868956
Unique NameFC868956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.207e-36
Identity = 73/138 (52.90%), Postives = 99/138 (71.74%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE 651
            +YDYLFK++LIGDSGVGKS LL RF  + ++    ST GV+F  R++  D K++K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK+DL   + V  + A AFA+
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFAD 141          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 7.207e-36
Identity = 72/145 (49.66%), Postives = 99/145 (68.28%), Query Frame = 1
Query:  229 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            +D++ DYLFKV+LIGDS VGK+ ++  F    +S   ++T GV+F  RS+  D K VK Q+WDTAGQER+R IT +YYR A  A++ YD+TR  TFE+V  W+ E+  +  +N+VIML+GNK+DL   R V  EDA   AE+  L
Sbjct:   10 SDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKHGL 154          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 73/138 (52.90%), Postives = 98/138 (71.01%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE 651
            +YDYLFK++LIGDSGVGKS LL RF  + ++    ST GV+F  R++  D K++K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK+DL   + V    A AFA+
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFAD 141          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 70/143 (48.95%), Postives = 101/143 (70.63%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            +YDYLFK+++IGDSG GKS+LL RF  N +S    ST GV+F  ++++ D+  +K QIWDTAGQER+R ITS YYRGA G + VYDVT  ++F+++ E WL+++  +  SN+  +L+GNK DL   R VS ++A   AE+  +
Sbjct:    3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNM 145          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.229e-35
Identity = 72/145 (49.66%), Postives = 98/145 (67.59%), Query Frame = 1
Query:  220 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER 654
            A   D++ DYLFKV+LIGDS VGK+ ++  F    +S   ++T GV+F  RS+  D K VK Q+WDTAGQER+R IT +YYR A  A++ YD+TR  TFE+V  W+ E+  +  +N+VIML+GNK+DL   R V  EDA   AE+
Sbjct:    7 ARTVDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEK 151          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.229e-35
Identity = 70/145 (48.28%), Postives = 99/145 (68.28%), Query Frame = 1
Query:  220 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER 654
            A  AD+++DYLFK++LIGDS VGK+ ++  F    ++   ++T GV+F  RS+  D K VK Q+WDTAGQER+R IT +YYR A  A++ YD+TR  TFE++  W+ E+  +  +N+VIML+GNK DL   R V  EDA   AE+
Sbjct:    7 ARAADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEK 151          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 66/130 (50.77%), Postives = 95/130 (73.08%), Query Frame = 1
Query:  241 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTE 630
            YDYLFK++LIGDSGVGK+ LL RF+ + F+    ST G++F  R++  D K +K QIWDTAGQER+R IT+AYYRGA+G + VYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS E
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKE 134          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.739e-35
Identity = 76/138 (55.07%), Postives = 97/138 (70.29%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE 651
            DY YLFK++LIGDSGVGKS LL RF  + +S    ST GV+F  R+I  + K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT  +TFENV +WL+E+      N+  +LVGNK+DL   + V    A AFA+
Sbjct:    4 DYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFAD 141          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.577e-35
Identity = 73/139 (52.52%), Postives = 98/139 (70.50%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER 654
            DYDYLFK++LIGDSGVGKS LL RF  + ++    ST GV+F  R+I  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK+DL   + V    A  +A++
Sbjct:    7 DYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQ 145          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.672e-35
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 1
Query:  238 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE 651
            +YDYLFK++LIGDSGVGKS LL RF  + +     ST GV+F  R++  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK DL   R VS E   A A+
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALAD 141          
The following BLAST results are available for this feature:
BLAST of FC868956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTV1_VOLCA7.207e-3652.90GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB19_MOUSE7.207e-3649.66Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
YPTC1_CHLRE9.413e-3652.90GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB1_THEPA9.413e-3648.95Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB19_RAT1.229e-3549.66Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]
RAB19_HUMAN1.229e-3548.28Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RAB8_DISOM2.097e-3550.77Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB1A_DICDI2.739e-3555.07Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB1A_LYMST3.577e-3552.52Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RIC1_ORYSJ4.672e-3553.62Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionC31007A02EF AbioticL1 Citrus clementina cDNA clone C31007A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868956 ID=FC868956; Name=FC868956; organism=Citrus clementina; type=EST; length=682bp
GAGGGACAAACAAACCCCTCGTTCCAATTTACAAAGTAGAAACAAAGAAA
ACAAACGAAACAAAAACGTGCTCGTTTGACACTAAAAACTATTAAATCCC
AAAACCCGCTCGTGTTTTACGTTTTTGTAGAAGCATTTATTAAAATCTCT
TTCGCGTCAGATGATCTGCTAATCCCAAAAAAAATTAACACATAAGAGAA
CACAAAAAGAGAAATGGGTGCGTACAGAGCGGACGATGACTATGATTATT
TGTTCAAGGTGGTTTTGATCGGCGACTCCGGCGTCGGAAAATCGAACCTT
TTGTCCAGGTTCACACGCAACGAGTTTAGCCTCGAATCAAAGTCCACCAC
TGGCGTCGAGTTTGCTACTCGGAGTATCCGTTGTGATGATAAGATCGTCA
AGGCTCAGATTTGGGATACCGCCGGCCAAGAAAGGTATCGTGCAATCACA
AGTGCATACTATCGAGGGGCTGTTGGTGCTTTGCTGGTCTATGATGTCAC
ACGTCATGTTACATTTGAAAATGTAGAGCGATGGCTGAAGGAGCTCCGAG
ATCACACAGATTCAAACATTGTGATCATGCTTGTTGGTAACAAAGCAGAT
CTGCGCCACCTGAGAGCAGTTTCCACTGAAGATGCCACAGCTTTTGCAGA
ACGAGAAACACTTTTTTTATGGAAACATCTGC
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