FC868960

Overview
NameFC868960
Unique NameFC868960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868960 vs. ExPASy Swiss-Prot
Match: NAC43_ARATH (NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 50/172 (29.07%), Postives = 84/172 (48.84%), Query Frame = 2
Query:  125 GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEI-QSEEEVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVEN---SPD---------------FEKDFVVCRLERKRE-KKTL 580
            GFRF+PT+E+++     K+ +     +  I+++DL   EPW++    +I  + +  WYFF     K     R  R T  G+WK TGR   I    +   IG +K L F +   A    K++W++HE  +++   SP+                ++ +VVCR+ +K+   KTL
Sbjct:   19 GFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRR--IGMRKTLVFYK-GRAPHGQKSDWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKKKNLHKTL 187          
BLAST of FC868960 vs. ExPASy Swiss-Prot
Match: NAC66_ARATH (NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 41/132 (31.06%), Postives = 65/132 (49.24%), Query Frame = 2
Query:  125 GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEI-QSEEEVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENS 517
            GFRF+PT+E+++     K+       +  I +IDL   EPW++    +I  + +  WYF+     K     R  R T  G+WK TGR   I      + IG +K L F +   A    K++W++HE  ++ S
Sbjct:   14 GFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMCKIGTTPQNDWYFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIYT--NGDRIGMRKTLVFYK-GRAPHGQKSDWIMHEYRLDES 142          
BLAST of FC868960 vs. ExPASy Swiss-Prot
Match: NAC90_ARATH (NAC domain-containing protein 90 OS=Arabidopsis thaliana GN=NAC090 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 49/177 (27.68%), Postives = 83/177 (46.89%), Query Frame = 2
Query:  122 VGFRFYPTDEQIILLLTMKRRDPAGFSV--RTIKEIDLYSFEPWELPCHSEIQ--SEEEVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHE-------IAVENSPDFEKDFVVCRL------ERKREKKTLGVVSTKR 601
            +GFRFYPT+E+++      + +        R I  +D++  EP  LP  + ++   + E W+FF     + A   R  R T  GYWK TG    +  K   ++IG KK + F    A   + KT+W ++E       +     P   ++F +CR+       R  +++  GV+ T+R
Sbjct:    7 IGFRFYPTEEELVSFYLRNQLEGRSDDSMHRVIPVLDVFEVEPSHLPNVAGVRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSK-DNKMIGAKKTMVFYTGKAPTGR-KTKWKMNEYHAVDETVNASTIPKLRREFSLCRVYITTGSSRAFDRRPEGVLQTER 181          
The following BLAST results are available for this feature:
BLAST of FC868960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NAC43_ARATH5.335e-1329.07NAC domain-containing protein 43 OS=Arabidopsis th... [more]
NAC66_ARATH3.458e-1231.06NAC domain-containing protein 66 OS=Arabidopsis th... [more]
NAC90_ARATH5.898e-1227.68NAC domain-containing protein 90 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC31007A07EF AbioticL1 Citrus clementina cDNA clone C31007A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868960 ID=FC868960; Name=FC868960; organism=Citrus clementina; type=EST; length=703bp
ATAGCCCACTGGCTCTTTTAATCTTTTGCTGACCAAATTGGAAAGAAGAA
GCTCTTACTCTCTCATTCTTGTTCTACGTTTCTCCTGCTGGGTGTTGAAT
CAGAAACCAATGGACAGTCTCGTGGGGTTCAGATTCTATCCAACTGATGA
ACAAATTATTCTTCTACTGACGATGAAGAGACGTGACCCTGCAGGTTTCT
CCGTCCGTACGATCAAGGAAATCGATCTCTACAGCTTTGAGCCCTGGGAG
CTACCCTGCCATTCTGAGATTCAGTCTGAGGAAGAAGTGTGGTACTTTTT
CTGTGAACCTTGTTACAAAAATGCCGAGAGTAAACGGGTACGTAGAAGAA
CAAAGGAAGGCTATTGGAAAAAGACTGGCAGAGGTTCTAACATCAAGCGC
AAATACAAAACTGAGGTGATTGGTACGAAGAAGATTTTGTCTTTTTCCCG
CGATGATGCTGCTGCCGAGAAAGATAAGACTGAGTGGGTTATACACGAGA
TAGCTGTTGAAAATAGCCCTGACTTTGAGAAGGATTTTGTTGTGTGTCGC
CTTGAAAGAAAACGGGAGAAGAAGACGCTTGGTGTTGTTTCCACTAAGAG
AAAACGGGAGAAGAAGACGCTTGGTGTTGTTTCCACTAAGAGAAAGCGGG
AGAAGAAGCTTGGTGTTTCACCAGCGATGGTGATCATCTTTGTCAATTTA
CTT
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