FC868962

Overview
NameFC868962
Unique NameFC868962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.909e-23
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G    I   +++ +   +++L+G  E YR+
Sbjct:   62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRV 189          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.411e-23
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G    I   +++ +   +++L+G  E YR+
Sbjct:   62 WYGPDRVMYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRV 189          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.411e-23
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    I   +++ +   ++VL+G  E YRI
Sbjct:   46 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI 173          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.373e-23
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    I   +++ +   +++L+G  E YRI
Sbjct:   47 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRI 174          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.373e-23
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +   +++ +   ++VL+G  E YRI
Sbjct:   39 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 166          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.094e-22
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  283 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            ++YGP+R  +L  G    +  P YLTGE PGDYG+D  GLS  P+ F +Y+   LIHARWAMLGA G   PE   K G   G EAVWFK GA +     L+Y G    +   N+V     +++L+G  E YR+
Sbjct:   35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRV 164          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.094e-22
Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE P DYG+D  GLS  P+ F+K +   +IH RWAMLGA G + PE F + G   G EAVWFK GA +     L+Y G    +   +++ +   ++VL+G  E YR+
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.428e-22
Identity = 56/132 (42.42%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +   +IH+RWAMLGA G + PE  +K G   G EAVWFK GA +     L+Y G    +   +++ +   ++VL+G  E YR+
Sbjct:   47 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRV 174          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.428e-22
Identity = 56/132 (42.42%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +   +IH+RWAMLGA G + PE  +K G   G EAVWFK GA +     L+Y G    +   +++ +   ++VL+G  E YR+
Sbjct:   47 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRV 174          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.428e-22
Identity = 59/132 (44.70%), Postives = 79/132 (59.85%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I   +++ +   ++VL+G  E YRI
Sbjct:   45 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI 172          
The following BLAST results are available for this feature:
BLAST of FC868962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB2A_PINSY4.909e-2343.18Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB2A_PYRPY6.411e-2343.18Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_MAIZE6.411e-2343.94Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_SOYBN8.373e-2343.18Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_CUCSA8.373e-2343.18Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE1.094e-2244.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_PETSP1.094e-2243.18Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_ORYSJ1.428e-2242.42Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.428e-2242.42Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ORYSJ1.428e-2244.70Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC31007A09EF AbioticL1 Citrus clementina cDNA clone C31007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868962 ID=FC868962; Name=FC868962; organism=Citrus clementina; type=EST; length=754bp
GACTCTCATCTTCACCATTTCTTTTCTCTAACACAAAGAAGCAGCAGCAG
CAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCT
CCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCT
GTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGT
TGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCG
TCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGAC
CGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGA
GTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTC
TCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATACATTGATT
CATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGC
CTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGA
CTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAAAAC
ATCCCAATCAACCTTGTTTTTGTTGTCATTGCTGAGATTGTTCTTGTAGG
TGGTGCTGAATATTATAGAATCACCCAACGTTTGGATTTGGAGGACAGCT
TCACCCAGTGGTCCATTTGACCCACTGGATAGCAAGGATCTGACCATTGC
ATGC
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