FC868962

Overview
NameFC868962
Unique NameFC868962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +   +++ +   ++VL+G  E YR+
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.182e-22
Identity = 55/132 (41.67%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +   +++ +   +++L+G  E YR+
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRV 176          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.182e-22
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYG DR  FL        + P YLTGE PGDYG+D  GLS  P+ F+K +   +IH+RWAMLGA G I PE  +K G   G EAVWFK GA +     L+Y G    +   +++ +   ++VL+G  E YR+
Sbjct:   48 WYGADRPKFLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRV 175          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22
Identity = 55/132 (41.67%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH RWAMLGA G + PE F + G   G EAVW K G+ +     L+Y G    +   +++ +   +++L+G  E YR+
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRV 178          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22
Identity = 56/132 (42.42%), Postives = 75/132 (56.82%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L Y G    +   +++ +   ++VL+G  E YR+
Sbjct:   48 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 175          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22
Identity = 56/132 (42.42%), Postives = 75/132 (56.82%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P  F+K +   +IH RW MLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +   +++ +   ++VL+G  E YR+
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22
Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F++ +   +IH+RWAMLGA G   PE   K G   G EAVWFK G+ +     L+Y G    I   +++ +   ++VL+G  E YR+
Sbjct:   49 WYGPDRPKYLGPF---SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRV 176          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.427e-22
Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH+RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G    I   +++ +   +++L+G  E YRI
Sbjct:   29 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRI 156          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.088e-22
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G    +   +L+ +   ++VL+G  E YRI
Sbjct:   50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRI 177          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.258e-22
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +   +IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I   +++ +  A++VL+G  E YR+
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRV 176          
The following BLAST results are available for this feature:
BLAST of FC868962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB21_TOBAC2.436e-2242.42Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB22_TOBAC3.182e-2241.67Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_LEMGI3.182e-2243.94Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PETSP4.156e-2241.67Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_HORVU4.156e-2242.42Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PETSP4.156e-2242.42Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB215_PEA4.156e-2243.18Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_SOYBN5.427e-2242.42Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_WHEAT7.088e-2243.94Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_PETSP9.258e-2242.42Chlorophyll a-b binding protein 37, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31007A09EF AbioticL1 Citrus clementina cDNA clone C31007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868962 ID=FC868962; Name=FC868962; organism=Citrus clementina; type=EST; length=754bp
GACTCTCATCTTCACCATTTCTTTTCTCTAACACAAAGAAGCAGCAGCAG
CAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCT
CCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCT
GTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGT
TGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCG
TCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGAC
CGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGA
GTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTC
TCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATACATTGATT
CATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGC
CTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGA
CTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAAAAC
ATCCCAATCAACCTTGTTTTTGTTGTCATTGCTGAGATTGTTCTTGTAGG
TGGTGCTGAATATTATAGAATCACCCAACGTTTGGATTTGGAGGACAGCT
TCACCCAGTGGTCCATTTGACCCACTGGATAGCAAGGATCTGACCATTGC
ATGC
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