FC868962
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22 Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + +IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + +++ + ++VL+G E YR+ Sbjct: 50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.182e-22 Identity = 55/132 (41.67%), Postives = 76/132 (57.58%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + +IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + +++ + +++L+G E YR+ Sbjct: 49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRV 176
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.182e-22 Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYG DR FL + P YLTGE PGDYG+D GLS P+ F+K + +IH+RWAMLGA G I PE +K G G EAVWFK GA + L+Y G + +++ + ++VL+G E YR+ Sbjct: 48 WYGADRPKFLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRV 175
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22 Identity = 55/132 (41.67%), Postives = 76/132 (57.58%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + +IH RWAMLGA G + PE F + G G EAVW K G+ + L+Y G + +++ + +++L+G E YR+ Sbjct: 51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRV 178
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22 Identity = 56/132 (42.42%), Postives = 75/132 (56.82%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + +IH RWAMLGA G + PE + G G EAVWFK G+ + L Y G + +++ + ++VL+G E YR+ Sbjct: 48 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 175
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22 Identity = 56/132 (42.42%), Postives = 75/132 (56.82%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR +L E P YLTGE PGDYG+D GLS P F+K + +IH RW MLGA G + PE F + G G EAVWFK G+ + L+Y G + +++ + ++VL+G E YR+ Sbjct: 50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22 Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + +IH+RWAMLGA G PE K G G EAVWFK G+ + L+Y G I +++ + ++VL+G E YR+ Sbjct: 49 WYGPDRPKYLGPF---SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRV 176
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.427e-22 Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + +IH+RWAMLGA G + PE + G G EA WFK G+ + L+Y G I +++ + +++L+G E YRI Sbjct: 29 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRI 156
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.088e-22 Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + +IH RWAMLGA G + PE + G G EA WFK G+ + L+Y G + +L+ + ++VL+G E YRI Sbjct: 50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRI 177
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 9.258e-22 Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYG DR +L + P YLTGE PGDYG+D GLS P+ F++ + +IH RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G I +++ + A++VL+G E YR+ Sbjct: 49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRV 176 The following BLAST results are available for this feature:
BLAST of FC868962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868962 ID=FC868962; Name=FC868962; organism=Citrus clementina; type=EST; length=754bpback to top |