FC868962

Overview
NameFC868962
Unique NameFC868962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 55/132 (41.67%), Postives = 75/132 (56.82%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE PGDYG+D   LS  P+ F+K +   +IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +   +++ +   ++VL+G  E YR+
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 55/132 (41.67%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGP+R  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +   +++ +   ++VL+G  E YR+
Sbjct:   51 WYGPNRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.062e-21
Identity = 55/132 (41.67%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +   +IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I   +++ +  +++VL+G  E YR+
Sbjct:   21 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRV 148          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.062e-21
Identity = 54/132 (40.91%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            W+GPD   +L        E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +   +++ +   +++L+G  E YRI
Sbjct:   12 WHGPDGVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 139          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21
Identity = 56/132 (42.42%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYG DR  FL        E P YL GE  GDYG+D  GLS  P+ F++ +   +IHARWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    +   +++ +   ++VL+G  E YR+
Sbjct:   52 WYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 179          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +   +IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I   +++ V  +++VL+G  E YR+
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRV 176          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21
Identity = 55/132 (41.67%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYG DR ++L  G    S  P YL+GE PGDYG+D  GLS  P+ F+K +   +IH+RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G    +   +++ +   +++L+G  E YR+
Sbjct:   49 WYGSDRPLYL--GPFSGSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRV 176          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +   +IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    +   +++ +   ++VL+G  E YR+
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRV 176          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21
Identity = 53/132 (40.15%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +   +IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +   +++ +   +++L+G  E YR+
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 177          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21
Identity = 53/132 (40.15%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +   +IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +   +++ +   +++L+G  E YR+
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 177          
The following BLAST results are available for this feature:
BLAST of FC868962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB25_PETSP1.579e-2141.67Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_NICPL1.579e-2141.67Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB25_SOLLC2.062e-2141.67Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_PEA2.062e-2140.91Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_PHYPA2.694e-2142.42Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC2.694e-2142.42Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_POLMU2.694e-2141.67Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB24_SOLLC3.518e-2140.91Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB22_ARATH3.518e-2140.15Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH3.518e-2140.15Chlorophyll a-b binding protein 165/180, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionC31007A09EF AbioticL1 Citrus clementina cDNA clone C31007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868962 ID=FC868962; Name=FC868962; organism=Citrus clementina; type=EST; length=754bp
GACTCTCATCTTCACCATTTCTTTTCTCTAACACAAAGAAGCAGCAGCAG
CAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCT
CCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCT
GTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGT
TGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCG
TCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGAC
CGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGA
GTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTC
TCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATACATTGATT
CATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGC
CTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGA
CTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAAAAC
ATCCCAATCAACCTTGTTTTTGTTGTCATTGCTGAGATTGTTCTTGTAGG
TGGTGCTGAATATTATAGAATCACCCAACGTTTGGATTTGGAGGACAGCT
TCACCCAGTGGTCCATTTGACCCACTGGATAGCAAGGATCTGACCATTGC
ATGC
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