FC868962
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.097e-21 Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR P+ L SE P YLTGE PGDYG+D +S P+ F+K + +IH RWAMLGA G + PE K G G EAVWFK GA + L+Y G I +++ + ++VL+G E YR+ Sbjct: 50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRV 177 HSP 2 Score: 20.7866 bits (42), Expect = 5.097e-21 Identity = 9/17 (52.94%), Postives = 9/17 (52.94%), Query Frame = 2 Query: 704 PSGPFDPLDSKDLTIAC 754 P G FDPL D AC Sbjct: 191 PGGAFDPLGLADDPEAC 207
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.837e-21 Identity = 53/132 (40.15%), Postives = 75/132 (56.82%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + +IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + +++ + +++L+G E YR+ Sbjct: 49 WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 176
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20 Identity = 55/132 (41.67%), Postives = 76/132 (57.58%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A +IH RWAMLGA G I PE K+ E VWFK G+ + L+Y G + +++ V+ ++VL+G E +RI Sbjct: 47 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 175
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.132e-19 Identity = 52/132 (39.39%), Postives = 76/132 (57.58%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A +IH RWAMLGA G + PE K+ E VWFK G+ + L+Y G + +++ V+ +++L+G E +RI Sbjct: 50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 178
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19 Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 1 Query: 340 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 E P YLTGE PGDYG+D GLS P+ F+K + +IH+ WAMLGA G + PE ++ G G EAVWFK G+ + L+Y G + +++ + ++VL+G E YRI Sbjct: 5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 117
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.251e-18 Identity = 53/134 (39.55%), Postives = 73/134 (54.48%), Query Frame = 1 Query: 283 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 ++YGPD G + + P TGE PGDYG+D GLS P+ F +Y+ LIHAR +LGA G + PE ++ G G A+WFK GA + LNY G I N+V + ++VL+G E YR+ Sbjct: 56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRV 185
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17 Identity = 50/132 (37.88%), Postives = 73/132 (55.30%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYG DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K + +IH RWA+ G + PE + G G E VWFK G+ + L++ G + +++ + ++VL+G E Y + Sbjct: 48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHV 175
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17 Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 1 Query: 340 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRITQ 678 E P YLTGE PGDYG+D GLS P+ F+K + +IH+R AM A G I PE + G G EAVWFK GA + L+Y G + +++ + +++L+G E YRI + Sbjct: 68 EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIAR 182
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.450e-16 Identity = 51/132 (38.64%), Postives = 70/132 (53.03%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR +L E P YLTGE GLS P+ F+K + +IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I +++ + +++L+G E YRI Sbjct: 48 WYGPDRVKYLGPF---SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRI 167
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.212e-13 Identity = 46/122 (37.70%), Postives = 59/122 (48.36%), Query Frame = 1 Query: 295 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFVVIAEIVLVGGAE 660 PDR ++ P S P +L G +PGD+G+DP GL+ P+ Q L+H RWAMLGAAG IPE K G P W+ G +T F I E+VL+G AE Sbjct: 63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVLIGWAE 165 The following BLAST results are available for this feature:
BLAST of FC868962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868962 ID=FC868962; Name=FC868962; organism=Citrus clementina; type=EST; length=754bpback to top |