FC868962

Overview
NameFC868962
Unique NameFC868962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.097e-21
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR    P+ L   SE  P YLTGE PGDYG+D   +S  P+ F+K +   +IH RWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    I   +++ +   ++VL+G  E YR+
Sbjct:   50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRV 177          

HSP 2 Score: 20.7866 bits (42), Expect = 5.097e-21
Identity = 9/17 (52.94%), Postives = 9/17 (52.94%), Query Frame = 2
Query:  704 PSGPFDPLDSKDLTIAC 754
            P G FDPL   D   AC
Sbjct:  191 PGGAFDPLGLADDPEAC 207          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.837e-21
Identity = 53/132 (40.15%), Postives = 75/132 (56.82%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +   +IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +   +++ +   +++L+G  E YR+
Sbjct:   49 WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 176          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 55/132 (41.67%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F+K +A  +IH RWAMLGA G I PE   K+      E VWFK G+ +     L+Y G    +   +++ V+  ++VL+G  E +RI
Sbjct:   47 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 175          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.132e-19
Identity = 52/132 (39.39%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F++ +A  +IH RWAMLGA G + PE   K+      E VWFK G+ +     L+Y G    +   +++ V+  +++L+G  E +RI
Sbjct:   50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 178          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  340 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH+ WAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +   +++ +   ++VL+G  E YRI
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 117          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.251e-18
Identity = 53/134 (39.55%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  283 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            ++YGPD       G   + + P   TGE PGDYG+D  GLS  P+ F +Y+   LIHAR  +LGA G + PE   ++ G   G  A+WFK GA +     LNY G    I   N+V  +  ++VL+G  E YR+
Sbjct:   56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRV 185          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 50/132 (37.88%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYG DR ++L  G L  S  P YLTGE PGDYG+D  GLS  P+ F+K +   +IH RWA+    G + PE   + G   G E VWFK G+ +     L++ G    +   +++ +   ++VL+G  E Y +
Sbjct:   48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHV 175          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 1
Query:  340 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRITQ 678
            E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH+R AM  A G I PE  +  G   G EAVWFK GA +     L+Y G    +   +++ +   +++L+G  E YRI +
Sbjct:   68 EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIAR 182          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 51/132 (38.64%), Postives = 70/132 (53.03%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE          GLS  P+ F+K +   +IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I   +++ +   +++L+G  E YRI
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRI 167          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.212e-13
Identity = 46/122 (37.70%), Postives = 59/122 (48.36%), Query Frame = 1
Query:  295 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFVVIAEIVLVGGAE 660
            PDR ++ P      S  P +L G +PGD+G+DP GL+  P+     Q   L+H RWAMLGAAG  IPE   K G    P   W+  G      +T   F            I E+VL+G AE
Sbjct:   63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVLIGWAE 165          
The following BLAST results are available for this feature:
BLAST of FC868962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB21_PINTH5.097e-2144.36Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_SINAL7.837e-2140.15Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_SOLLC1.337e-2041.67Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU1.132e-1939.39Chlorophyll a-b binding protein of LHCII type III,... [more]
CB22_CUCSA1.478e-1942.98Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_DUNSA1.251e-1839.55Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB48_MAIZE2.360e-1737.88Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_MALDO2.360e-1741.38Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB22_SOYBN4.450e-1638.64Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB12_SOLLC1.212e-1337.70Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC31007A09EF AbioticL1 Citrus clementina cDNA clone C31007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868962 ID=FC868962; Name=FC868962; organism=Citrus clementina; type=EST; length=754bp
GACTCTCATCTTCACCATTTCTTTTCTCTAACACAAAGAAGCAGCAGCAG
CAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCT
CCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCT
GTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGT
TGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCG
TCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGAC
CGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGA
GTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTC
TCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATACATTGATT
CATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGC
CTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGA
CTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAAAAC
ATCCCAATCAACCTTGTTTTTGTTGTCATTGCTGAGATTGTTCTTGTAGG
TGGTGCTGAATATTATAGAATCACCCAACGTTTGGATTTGGAGGACAGCT
TCACCCAGTGGTCCATTTGACCCACTGGATAGCAAGGATCTGACCATTGC
ATGC
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