FC868964

Overview
NameFC868964
Unique NameFC868964
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868964 vs. ExPASy Swiss-Prot
Match: EFTU_PROAC (Elongation factor Tu OS=Propionibacterium acnes GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 67/192 (34.90%), Postives = 99/192 (51.56%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS-FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEEVPFVPI 675
            + K H NI  IGH+D GK+T T         I K + +++     E+N+ S F     +DK   ER+RGITI IA  +++T K +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ +  P V I
Sbjct:    8 RTKPHCNIGTIGHIDHGKTTLTA-------AISKVLHDKYP----ELNEESPFDQ---IDKAPEERQRGITISIAHIEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPAIVVALNKCDMVD---DEELIELVEMEVRELLTSQEFDGDNCPVVRI 175          
BLAST of FC868964 vs. ExPASy Swiss-Prot
Match: EFTU_GRATL (Elongation factor Tu, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=tufA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 60/189 (31.75%), Postives = 95/189 (50.26%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEEVPFV 669
            ++K H+NI  IGHVD GK+T T  +   L   +    ++F++               +D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  +  +++PFV
Sbjct:    8 RKKPHVNIGTIGHVDHGKTTLTAAISATLAAANDTKAKKFDE---------------IDAAPEEKARGITINTAHVEYETQNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPNVVVFLNKQDQVD---DEELLELVELEVRELLIQYDFPGDDIPFV 171          
BLAST of FC868964 vs. ExPASy Swiss-Prot
Match: EFTU_GEOMG (Elongation factor Tu OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 62/189 (32.80%), Postives = 92/189 (48.68%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEEVPFV 669
            + K H+NI  IGHVD GK+T T  +   L               AE  +  FK    +D    ERERGITI  +  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L    +  +++P +
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITRVL---------------AERGQAEFKGFDQIDNAPEERERGITIATSHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMVD---DEELLELVELEIRELLSSYDFPGDDIPII 171          
BLAST of FC868964 vs. ExPASy Swiss-Prot
Match: EFTU_BORT9 (Elongation factor Tu OS=Borrelia turicatae (strain 91E135) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 62/189 (32.80%), Postives = 99/189 (52.38%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEEVPFV 669
            + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D AVL++ + +G        + QT+EH LLA  +G+ ++I   NK+D   P+      + +  EV   ++K G+ P + P V
Sbjct:    8 RTKPHMNVGTIGHVDHGKTTLTAAISIYCSKVNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETAGMHYAHVDCPGHADYIKNMITGAAQMDAAVLLVAADSGA-------EPQTKEHLLLAQRMGINKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGF-PGDTPIV 170          
BLAST of FC868964 vs. ExPASy Swiss-Prot
Match: EFTU2_WOLPM (Elongation factor Tu 2 OS=Wolbachia pipientis wMel GN=tuf2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 64/187 (34.22%), Postives = 88/187 (47.06%), Query Frame = 1
Query:  109 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEEVPFV 669
            K H+N+  IGHVD GK+T T  +    G                    +F     +DK   ER+RGITI  A  +++T K +   +D PGH D++KNMI G +Q D A+L++    G          QTREH LLA  +GV  ++   NK D           D +  EV   L K G+  +EVP V
Sbjct:   10 KPHVNVGTIGHVDHGKTTLTAAITKHYG--------------------NFVAYDQIDKAPEERKRGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMIVGAAQMDAAILVVSGVDGPMP-------QTREHILLAKQVGVGYIVVYINKADVA----DADMIDLVEMEVRELLSKYGFPGDEVPVV 165          
BLAST of FC868964 vs. ExPASy Swiss-Prot
Match: EFTU1_WOLPM (Elongation factor Tu 1 OS=Wolbachia pipientis wMel GN=tuf1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 64/187 (34.22%), Postives = 88/187 (47.06%), Query Frame = 1
Query:  109 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEEVPFV 669
            K H+N+  IGHVD GK+T T  +    G                    +F     +DK   ER+RGITI  A  +++T K +   +D PGH D++KNMI G +Q D A+L++    G          QTREH LLA  +GV  ++   NK D           D +  EV   L K G+  +EVP V
Sbjct:   10 KPHVNVGTIGHVDHGKTTLTAAITKHYG--------------------NFVAYDQIDKAPEERKRGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMIVGAAQMDAAILVVSGVDGPMP-------QTREHILLAKQVGVGYIVVYINKADVA----DADMIDLVEMEVRELLSKYGFPGDEVPVV 165          
BLAST of FC868964 vs. ExPASy Swiss-Prot
Match: CYSN_YERPS (Sulfate adenylyltransferase subunit 1 OS=Yersinia pseudotuberculosis GN=cysN PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 55/156 (35.26%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 564
            + KT +  +  G VD GKST  G L++    I +  +     ++  +  +  K   A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  D A+L+ID+  G  +       QTR H+ +A  LG++ ++   NKMD
Sbjct:   26 QHKTMLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSTLHTDSKRIGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-------QTRRHSFIATLLGIRHLVVAVNKMD 174          
BLAST of FC868964 vs. ExPASy Swiss-Prot
Match: CYSN_YERPE (Sulfate adenylyltransferase subunit 1 OS=Yersinia pestis GN=cysN PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 55/156 (35.26%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 564
            + KT +  +  G VD GKST  G L++    I +  +     ++  +  +  K   A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  D A+L+ID+  G  +       QTR H+ +A  LG++ ++   NKMD
Sbjct:   26 QHKTMLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSTLHTDSKRIGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-------QTRRHSFIATLLGIRHLVVAVNKMD 174          
BLAST of FC868964 vs. ExPASy Swiss-Prot
Match: CYSN_YERP3 (Sulfate adenylyltransferase subunit 1 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=cysN PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 55/156 (35.26%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 564
            + KT +  +  G VD GKST  G L++    I +  +     ++  +  +  K   A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  D A+L+ID+  G  +       QTR H+ +A  LG++ ++   NKMD
Sbjct:   26 QHKTMLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSTLHTDSKRIGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-------QTRRHSFIATLLGIRHLVVAVNKMD 174          
BLAST of FC868964 vs. ExPASy Swiss-Prot
Match: CYSN_PHOPR (Sulfate adenylyltransferase subunit 1 OS=Photobacterium profundum GN=cysN PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 63/191 (32.98%), Postives = 98/191 (51.31%), Query Frame = 1
Query:  109 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFK--YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEEVPFVPI 675
            K+ +  +  G VD GKST  G L++    I +  +     ++ ++     K   A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  D AV++ID+  G  +       QTR H+ +A  LG++  I   NKMD     + + R+  I  E   + +K+  N  E+  VP+
Sbjct:   24 KSLLRFLTCGSVDDGKSTLIGRLLHDSHQIYEDQLAAIYTDSQKVGTTGDKPDLALLVDGLQAEREQGITIDVAYRYFSTKKRKFIIADTPGHEQYTRNMATGASTCDVAVILIDARKGVLD-------QTRRHSYIASLLGIRHFIVAINKMDLV--GFDEERFTSIRDEYLEFAEKLNKN-IEIKLVPL 204          
The following BLAST results are available for this feature:
BLAST of FC868964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PROAC1.872e-2034.90Elongation factor Tu OS=Propionibacterium acnes GN... [more]
EFTU_GRATL1.872e-2031.75Elongation factor Tu, chloroplastic OS=Gracilaria ... [more]
EFTU_GEOMG1.872e-2032.80Elongation factor Tu OS=Geobacter metallireducens ... [more]
EFTU_BORT91.872e-2032.80Elongation factor Tu OS=Borrelia turicatae (strain... [more]
EFTU2_WOLPM1.872e-2034.22Elongation factor Tu 2 OS=Wolbachia pipientis wMel... [more]
EFTU1_WOLPM1.872e-2034.22Elongation factor Tu 1 OS=Wolbachia pipientis wMel... [more]
CYSN_YERPS1.872e-2035.26Sulfate adenylyltransferase subunit 1 OS=Yersinia ... [more]
CYSN_YERPE1.872e-2035.26Sulfate adenylyltransferase subunit 1 OS=Yersinia ... [more]
CYSN_YERP31.872e-2035.26Sulfate adenylyltransferase subunit 1 OS=Yersinia ... [more]
CYSN_PHOPR1.872e-2032.98Sulfate adenylyltransferase subunit 1 OS=Photobact... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31007A11EF AbioticL1 Citrus clementina cDNA clone C31007A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868964 ID=FC868964; Name=FC868964; organism=Citrus clementina; type=EST; length=677bp
CCTCTTTTCAATACACTCTCTCCATTTCCGAAGGGCGGCGAGAGAGAACC
ATTTTCGCGAATATCATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGG
GTAAGGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCT
GGAAAGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGA
CAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGA
GGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAA
CGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTA
CTACTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACA
TGATTACCGGTACCTCACAGGCTGACTGTGCTGTCCTCATCATTGACTCT
ACCACTGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGA
GCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCT
GTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAGGCTAGGTACGAT
GAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCC
CGAAGAAGTCCCATTCGTGCCCATCTC
back to top