FC868969

Overview
NameFC868969
Unique NameFC868969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868969_ssr52 microsatellite FC868969_ssr52:52..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  419 PCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHR--EWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHL 760
            P  +  ++  +L+ ATG+F  D++LGEG FG V++   ++          G  +AVK +    L      +++  V  +  L HPN+ KL+GYC E  Q L+VYEF   GSL + L
Sbjct:  398 PSNVRLYSVADLQIATGSFSVDNLLGEGTFGRVYRAEFDD----------GKVLAVKKIDSSALPHGMTDDFIEMVSKIANLDHPNVTKLVGYCAEHGQHLVVYEFHKNGSLHDFL 503          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK13_ARATH (Cysteine-rich receptor-like protein kinase 13 OS=Arabidopsis thaliana GN=CRK13 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12
Identity = 40/114 (35.09%), Postives = 66/114 (57.89%), Query Frame = 2
Query:  431 LQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKT 772
            LQ+ F+ +++AT NF     LG GG G+VFKG + +          G  +AVK L     Q  +E+  EV  + +L H NLV+L+G+ ++ +++++VYE++   SL+  LF  T
Sbjct:  346 LQYKFKTIETATNNF--SERLGHGGSGHVFKGRLPD----------GKEIAVKRLSEKTEQSKKEFKNEVVLVAKLQHRNLVRLLGFSVKGEEKIIVYEYLPNRSLDYILFDPT 447          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: WAKLC_ARATH (Wall-associated receptor kinase-like 3 OS=Arabidopsis thaliana GN=WAKL3 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.561e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHL 760
            F+ +EL+ AT NF  D +LG+GG G V+K  + +          G  VAVK  K        E++ E+  L Q++H N+VKL+G C+E +  +LVYE++  G L   L
Sbjct:  416 FSSRELEKATDNFSIDRVLGQGGQGTVYKRMLVD----------GSIVAVKRSKVVDEDKMEEFINEIVLLSQINHRNIVKLLGCCLETEVPILVYEYIPNGDLFKRL 513          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: WAKLI_ARATH (Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.039e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHL 760
            F+ +EL+ AT NF  + +LG+GG G V+KG + +          G  VAVK  K        E++ EV  L Q++H N+VKL+G C+E +  +LVYE +  G L   L
Sbjct:  409 FSSKELEKATDNFNMNRVLGQGGQGTVYKGMLVD----------GRIVAVKRSKVLDEDKVEEFINEVGVLSQINHRNIVKLMGCCLETEVPILVYEHIPNGDLFKRL 506          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: WAKLO_ARATH (Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.543e-11
Identity = 37/110 (33.64%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFR 766
            F ++E++ AT  F     LG G +G V++G ++ +            VA+K L+    +   + + E+  L  + HPNLV+L+G CIE    +LVYE+M  G+L  HL R
Sbjct:  336 FPYKEIEKATDGFSEKQKLGIGAYGTVYRGKLQNDEW----------VAIKRLRHRDSESLDQVMNEIKLLSSVSHPNLVRLLGCCIEQGDPVLVYEYMPNGTLSEHLQR 435          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: ACCR4_ARATH (Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.543e-11
Identity = 38/117 (32.48%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  416 SPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPG--SGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHL 760
            +P QL++F+  EL  AT  F     LG G FG V++G + +      K    +  T++  +++         +V E++ + +L+H NLV+L+G+  + ++R+LVYE+M  GSL +HL
Sbjct:  424 NPGQLMEFSIDELALATDGFSVRFHLGIGSFGSVYQGVLSDGRHVAIKRAELTNPTLSGTTMRHRRADKDSAFVNELESMSRLNHKNLVRLLGFYEDTEERILVYEYMKNGSLADHL 540          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y5393_ARATH (Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  428 LLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHRE-WVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFR 766
            L  +T+ ELK  T +F    I+G+GGFG V+ G +           +G  VAVK LK   L+G  E ++ EV  + Q  H N+V L+G+C E  +R +VYEF+  GSL+  + R
Sbjct:  485 LNMYTYAELKKITKSF--SYIIGKGGFGTVYGGNLS----------NGRKVAVKVLKD--LKGSAEDFINEVASMSQTSHVNIVSLLGFCFEGSKRAIVYEFLENGSLDQFMSR 584          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 48/144 (33.33%), Postives = 68/144 (47.22%), Query Frame = 2
Query:  359 PNEAHLSSDNPDPA---PTDEKS-----PCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHR--EWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHL 760
            P+E H S D+ D     P   K      P  +  +T  +L+ AT +F  D++LGEG FG V++   E+          G  +AVK +    L      ++   V  +  L H N+ KL GYC E  Q L+VYEF   GSL + L
Sbjct:  373 PSERHKSFDDDDSTMRKPIVAKKAAVVVPSNVNTYTVSDLQVATNSFSVDNLLGEGTFGRVYRAQFED----------GKVLAVKKIDSSALPTDTADDFTEIVSKIAHLDHENVTKLDGYCSEHGQHLVVYEFHRNGSLHDFL 506          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 39/112 (34.82%), Postives = 58/112 (51.79%), Query Frame = 2
Query:  431 LQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQ-GHREWVAEVDF-LGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHL 760
            ++F   +L+SAT NF P ++LGEG  G V++          AK   G T+AVK +       G  E +  +   L ++ H N+ +L+GYC E    +LVYE+   GSL   L
Sbjct:  390 VEFELSDLQSATANFSPGNLLGEGSIGRVYR----------AKYSDGRTLAVKKIDSTLFDSGKSEGITPIVMSLSKIRHQNIAELVGYCSEQGHNMLVYEYFRNGSLHEFL 491          
The following BLAST results are available for this feature:
BLAST of FC868969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
SRF6_ARATH9.154e-1234.48Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
CRK13_ARATH9.154e-1235.09Cysteine-rich receptor-like protein kinase 13 OS=A... [more]
WAKLC_ARATH1.561e-1137.04Wall-associated receptor kinase-like 3 OS=Arabidop... [more]
WAKLI_ARATH2.039e-1137.96Wall-associated receptor kinase-like 22 OS=Arabido... [more]
WAKLO_ARATH4.543e-1133.64Wall-associated receptor kinase-like 14 OS=Arabido... [more]
ACCR4_ARATH4.543e-1132.48Serine/threonine-protein kinase-like protein CCR4 ... [more]
Y5393_ARATH5.933e-1138.60Probable receptor-like protein kinase At5g39030 OS... [more]
SRF7_ARATH5.933e-1133.33Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
SRF5_ARATH7.749e-1134.82Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31007B04EF AbioticL1 Citrus clementina cDNA clone C31007B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868969 ID=FC868969; Name=FC868969; organism=Citrus clementina; type=EST; length=783bp
GACTTCACTTCTCTTTTCTCTTTCTTCTTCTATTAAACCAATGGCCAGTC
CCCTCCTCCTCCTCCTCTTGTTTACACTTTGTTTTATCATGCAATTATAT
ATGTAAATTACTACTACTCACTGCAACATGTAACGAAACATAGAAATTAC
AATTAACAAACGAATAAAAAAAATATTAATCTTTCATTTCATGGAAACCA
AGTGCGGTTGCTGGGCTTTTCTTAAACGCGGCGTTAGAGGTTCCTGCAAG
TCCTCTGCTTCTAATCACTCTGCTAACACTATTCCTCGTACTAGTCTTGT
TTATGATGCAGCTACTGAGACGCGATACTTGAATGCTAGTAATCGGGAGC
TATGTGCTCCAAATGAAGCTCACTTGTCCTCGGATAATCCTGATCCAGCT
CCTACAGATGAAAAATCACCATGCCAGCTGCTTCAGTTCACTTTTCAGGA
GCTAAAATCAGCAACTGGAAATTTTAGGCCTGATAGTATTCTTGGGGAGG
GTGGATTTGGATATGTCTTCAAAGGATGGATTGAAGAAAATGGGACAGCT
CCGGCAAAACCCGGGTCGGGAATTACAGTTGCTGTTAAGAGCTTGAAGCC
AGATGGTCTTCAGGGCCATAGAGAATGGGTGGCTGAGGTTGACTTTCTTG
GGCAGCTTCACCATCCTAATCTTGTTAAGCTTATTGGCTACTGCATTGAA
GATGATCAGCGTCTGCTTGTTTATGAATTCATGACTCGTGGTAGTCTTGA
AAATCATCTTTTTCGAAAGACTATACCTCTTCC
back to top