FC868969

Overview
NameFC868969
Unique NameFC868969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868969_ssr52 microsatellite FC868969_ssr52:52..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18
Identity = 55/142 (38.73%), Postives = 81/142 (57.04%), Query Frame = 2
Query:  365 EAHLSSDNPDPAPTDEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHL---FRKTIPL 781
            E  +  ++P P P       +   FT  EL SAT +F   S +G GG+G V+KG +         PG G+ VAVK  +   LQG +E+  E++ L +LHH NLV L+GYC +  +++LVYE+M  GSL++ L   FR+ + L
Sbjct:  597 EVDMEQEHPLPKPPMNMESVKGYNFT--ELDSATSSFSDLSQIGRGGYGKVYKGHL---------PG-GLVVAVKRAEQGSLQGQKEFFTEIELLSRLHHRNLVSLLGYCDQKGEQMLVYEYMPNGSLQDALSARFRQPLSL 726          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y5241_ARATH (Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18
Identity = 50/134 (37.31%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  377 SSDNPDPAPTDEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKTIP 778
            SS++     T   S    L+ +F EL+S T NF    ++G GGFG VF+G +++N            VAVK   P   QG  E+++E+  L ++ H +LV L+GYC E  + +LVYE+M +G L++HL+  T P
Sbjct:  457 SSNSRTTERTVSSSGYHTLRISFAELQSGTNNFDRSLVIGVGGFGMVFRGSLKDN----------TKVAVKRGSPGSRQGLPEFLSEITILSKIRHRHLVSLVGYCEEQSEMILVYEYMDKGPLKSHLYGSTNP 580          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18
Identity = 55/116 (47.41%), Postives = 69/116 (59.48%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF-RKTIPL 781
            FT+ ELKSAT +F P + LGEGGFG V+KG          K   G  VAVK L     QG  ++VAE+  +  + H NLVKL G C E + RLLVYE++  GSL+  LF  KT+ L
Sbjct:  681 FTYSELKSATQDFDPSNKLGEGGFGPVYKG----------KLNDGREVAVKLLSVGSRQGKGQFVAEIVAISAVQHRNLVKLYGCCYEGEHRLLVYEYLPNGSLDQALFGEKTLHL 786          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK20_ARATH (Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18
Identity = 56/130 (43.08%), Postives = 79/130 (60.77%), Query Frame = 2
Query:  395 PAPT---DEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKTI 775
            PA T   D+ +    LQF F+ + +AT  F P + LG+GGFG V+KG      T P    SG+ VAVK L  +  QG +E+  EV  + +L H NLVKL+GYC+E ++++LVYEF+   SL+  LF  T+
Sbjct:  315 PAETTDGDDITTAGSLQFDFKAIVAATDIFLPINKLGQGGFGEVYKG------TFP----SGVQVAVKRLSKNSGQGEKEFENEVVVVAKLQHRNLVKLLGYCLEGEEKILVYEFVPNKSLDYFLFDPTM 434          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18
Identity = 49/114 (42.98%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKTIP 778
            F FQE+  AT  F   S+LG GGFG V+KG +E+          G  VAVK   P   QG  E+  E++ L +L H +LV LIGYC E  + +LVYE+M  G L +HL+   +P
Sbjct:  498 FMFQEIMDATNKFDESSLLGVGGFGRVYKGTLED----------GTKVAVKRGNPRSEQGMAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGADLP 601          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK4_ARATH (Cysteine-rich receptor-like protein kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18
Identity = 50/124 (40.32%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  404 TDEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKTI 775
            +D+ +    LQF F+ +++AT  F   + LG+GGFG V+KG             SG+ VAVK L     QG RE+  EV  + +L H NLV+L+G+C+E D+R+LVYEF+   SL+  +F  T+
Sbjct:  328 SDDITTAGSLQFDFKAIEAATNKFCETNKLGQGGFGEVYKGIFP----------SGVQVAVKRLSKTSGQGEREFANEVIVVAKLQHRNLVRLLGFCLERDERILVYEFVPNKSLDYFIFDSTM 441          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.011e-18
Identity = 58/146 (39.73%), Postives = 82/146 (56.16%), Query Frame = 2
Query:  332 NASNRELCAPNEAHLSSDNPDPAPTDEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            N SN E  AP    L +D+    PT      +  +FT+ E+ + T NF+   ILG+GGFG V+ G +  NGT          VAVK L     QG++++ AEV+ L ++HH NLV L+GYC E D+  L+YE+M  G L+ H+  K
Sbjct:  537 NPSNDE--APTSCMLPADSRSSEPT---IVTKNKKFTYAEVLTMTNNFQ--KILGKGGFGIVYYGSV--NGTEQ--------VAVKMLSHSSAQGYKQFKAEVELLLRVHHKNLVGLVGYCEEGDKLALIYEYMANGDLDEHMSGK 665          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.011e-18
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 2
Query:  428 LLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            +  F+ +++K AT NF   + +GEGGFG V+KG          K   G  +AVK L     QG+RE++ E+  +  LHHPNLVKL G C+E  Q LLVYEF+   SL   LF
Sbjct:  609 IASFSLRQIKIATNNFDSANRIGEGGFGPVYKG----------KLFDGTIIAVKQLSTGSKQGNREFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLARALF 710          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.545e-18
Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            FT +++K+AT NF     +GEGGFG V+KG + E          G  +AVK L     QG+RE+V E+  +  L HPNLVKL G C+E +Q +LVYE++    L   LF K
Sbjct:  666 FTLRQIKAATDNFDVTRKIGEGGFGSVYKGELSE----------GKLIAVKQLSAKSRQGNREFVNEIGMISALQHPNLVKLYGCCVEGNQLILVYEYLENNCLSRALFGK 766          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: BRL3_ARATH (Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.545e-18
Identity = 52/115 (45.22%), Postives = 68/115 (59.13%), Query Frame = 2
Query:  428 LLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKT 772
            L + TF  L  AT  F  DS++G GGFG V+K          AK   G  VA+K L     QG RE++AE++ +G++ H NLV L+GYC   ++RLLVYE+M  GSLE  L  KT
Sbjct:  843 LRKLTFAHLLEATNGFSADSMIGSGGFGDVYK----------AKLADGSVVAIKKLIQVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKYGSLETVLHEKT 947          
The following BLAST results are available for this feature:
BLAST of FC868969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
Y5374_ARATH1.722e-1838.73Probable LRR receptor-like serine/threonine-protei... [more]
Y5241_ARATH1.722e-1837.31Probable receptor-like protein kinase At5g24010 OS... [more]
Y5614_ARATH2.249e-1847.41Probable LRR receptor-like serine/threonine-protei... [more]
CRK20_ARATH2.249e-1843.08Putative cysteine-rich receptor-like protein kinas... [more]
THE1_ARATH2.938e-1842.98Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
CRK4_ARATH3.837e-1840.32Cysteine-rich receptor-like protein kinase 4 OS=Ar... [more]
Y5181_ARATH5.011e-1839.73Probable LRR receptor-like serine/threonine-protei... [more]
Y1534_ARATH5.011e-1843.75Probable LRR receptor-like serine/threonine-protei... [more]
Y1765_ARATH6.545e-1843.24Probable LRR receptor-like serine/threonine-protei... [more]
BRL3_ARATH6.545e-1845.22Receptor-like protein kinase BRI1-like 3 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC31007B04EF AbioticL1 Citrus clementina cDNA clone C31007B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868969 ID=FC868969; Name=FC868969; organism=Citrus clementina; type=EST; length=783bp
GACTTCACTTCTCTTTTCTCTTTCTTCTTCTATTAAACCAATGGCCAGTC
CCCTCCTCCTCCTCCTCTTGTTTACACTTTGTTTTATCATGCAATTATAT
ATGTAAATTACTACTACTCACTGCAACATGTAACGAAACATAGAAATTAC
AATTAACAAACGAATAAAAAAAATATTAATCTTTCATTTCATGGAAACCA
AGTGCGGTTGCTGGGCTTTTCTTAAACGCGGCGTTAGAGGTTCCTGCAAG
TCCTCTGCTTCTAATCACTCTGCTAACACTATTCCTCGTACTAGTCTTGT
TTATGATGCAGCTACTGAGACGCGATACTTGAATGCTAGTAATCGGGAGC
TATGTGCTCCAAATGAAGCTCACTTGTCCTCGGATAATCCTGATCCAGCT
CCTACAGATGAAAAATCACCATGCCAGCTGCTTCAGTTCACTTTTCAGGA
GCTAAAATCAGCAACTGGAAATTTTAGGCCTGATAGTATTCTTGGGGAGG
GTGGATTTGGATATGTCTTCAAAGGATGGATTGAAGAAAATGGGACAGCT
CCGGCAAAACCCGGGTCGGGAATTACAGTTGCTGTTAAGAGCTTGAAGCC
AGATGGTCTTCAGGGCCATAGAGAATGGGTGGCTGAGGTTGACTTTCTTG
GGCAGCTTCACCATCCTAATCTTGTTAAGCTTATTGGCTACTGCATTGAA
GATGATCAGCGTCTGCTTGTTTATGAATTCATGACTCGTGGTAGTCTTGA
AAATCATCTTTTTCGAAAGACTATACCTCTTCC
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