FC868969

Overview
NameFC868969
Unique NameFC868969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868969_ssr52 microsatellite FC868969_ssr52:52..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK35_ARATH (Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana GN=CRK35 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17
Identity = 47/120 (39.17%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  404 TDEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            TDE +    LQF+F+ +++AT  F   +++G GGFG V++G          K  SG  VAVK L     QG  E+  E   + +L H NLV+L+G+C+E ++++LVYEF+   SL+  LF
Sbjct:  322 TDEITTTHSLQFSFKTIEAATDKFSDSNMIGRGGFGEVYRG----------KLSSGPEVAVKRLSKTSGQGAEEFKNEAVLVSKLQHKNLVRLLGFCLEGEEKILVYEFVPNKSLDYFLF 431          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRI4_MAIZE (Putative receptor protein kinase CRINKLY4 OS=Zea mays GN=CR4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17
Identity = 59/154 (38.31%), Postives = 80/154 (51.95%), Query Frame = 2
Query:  323 RYLNASNRELCAPNEAHLS--SDNPDPAPTDEKSPCQLLQ-FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSL--KPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            R+   SNREL        S   DN    P  E    +  Q F+++EL+ ATG F  DS +G+G F  VFKG + +          G  VAVK      D  +  +E+  E+D L +L+H +L+ L+GYC +  +RLLVYEFM  GSL  HL  K
Sbjct:  452 RHCQCSNRELRLAKSTAYSFRKDNMKIQPDMEDLKIRRAQEFSYEELEQATGGFSEDSQVGKGSFSCVFKGILRD----------GTVVAVKRAIKASDVKKSSKEFHNELDLLSRLNHAHLLNLLGYCEDGSERLLVYEFMAHGSLYQHLHGK 595          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: BRI1_SOLPE (Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 2
Query:  428 LLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHL 760
            L + TF +L  AT  F  DS++G GGFG V+K  +++          G  VA+K L     QG RE+ AE++ +G++ H NLV L+GYC   ++RLLVYE+M  GSLE+ L
Sbjct:  873 LRKLTFADLLEATNGFHNDSLVGSGGFGDVYKAQLKD----------GSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVL 973          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: BRI1_SOLLC (Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 2
Query:  428 LLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHL 760
            L + TF +L  AT  F  DS++G GGFG V+K  +++          G  VA+K L     QG RE+ AE++ +G++ H NLV L+GYC   ++RLLVYE+M  GSLE+ L
Sbjct:  873 LRKLTFADLLEATNGFHNDSLVGSGGFGDVYKAQLKD----------GSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVL 973          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y2899_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.236e-17
Identity = 57/150 (38.00%), Postives = 78/150 (52.00%), Query Frame = 2
Query:  323 RYLNASNRELCAPNEAHLSSDNPDPAPTDEKS-PCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            R   AS   L AP    +S  NP      E S   + ++FT+ E++  T NF  D  LGEGGFG V+ G++               VAVK L     QG++ + AEV+ L ++HH NLV L+GYC E +   L+YE+M  G L+ HL  K
Sbjct:  530 RKKKASPSNLHAPPSMPVS--NPGHNSQSESSFTSKKIRFTYSEVQEMTNNF--DKALGEGGFGVVYHGFVNVIEQ----------VAVKLLSQSSSQGYKHFKAEVELLMRVHHINLVSLVGYCDEGEHLALIYEYMPNGDLKQHLSGK 665          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK32_ARATH (Putative cysteine-rich receptor-like protein kinase 32 OS=Arabidopsis thaliana GN=CRK32 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.236e-17
Identity = 49/123 (39.84%), Postives = 71/123 (57.72%), Query Frame = 2
Query:  395 PAPTDEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            P   D+ +  Q LQF F  L++AT  F  ++ LG+GGFG V+KG +               VAVK L  +  QG +E+  EV  + +L H NLV+L+G+C+E D+++LVYEF+   SL   LF
Sbjct:  295 PKTDDDMTSPQSLQFDFMTLEAATDKFSRNNKLGKGGFGEVYKGMLPNE----------TEVAVKRLSSNSGQGTQEFKNEVVIVAKLQHKNLVRLLGFCLERDEQILVYEFVPNKSLNYFLF 407          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y5596_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.451e-17
Identity = 52/130 (40.00%), Postives = 73/130 (56.15%), Query Frame = 2
Query:  380 SDNPDPAPTDEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            +++P+P+   +K      +FT+ E+   T NF    ++GEGGFG V  G +  NG+          VAVK L     QG++E+ AEVD L ++HH NLV L+GYC E D   L+YEF+  G L  HL  K
Sbjct:  556 ANSPEPSIEMKKR-----KFTYSEVTKMTNNF--GRVVGEGGFGVVCHGTV--NGSEQ--------VAVKLLSQSSTQGYKEFKAEVDLLLRVHHTNLVSLVGYCDEGDHLALIYEFVPNGDLRQHLSGK 668          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: RLK7_ARATH (Receptor-like protein kinase At5g59670 OS=Arabidopsis thaliana GN=At5g59670 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.451e-17
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 2
Query:  434 QFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            +FT+ E+   T NF+   +LG+GGFG V+ G ++ +            VAVK L     QG +E+ AEVD L ++HH NLV L+GYC E D   LVYEF+  G L+ HL  K
Sbjct:  553 RFTYSEVVQVTKNFQ--RVLGKGGFGMVYHGTVKGSEQ----------VAVKVLSQSSTQGSKEFKAEVDLLLRVHHTNLVSLVGYCCEGDYLALVYEFLPNGDLKQHLSGK 652          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK33_ARATH (Putative cysteine-rich receptor-like protein kinase 33 OS=Arabidopsis thaliana GN=CRK33 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.451e-17
Identity = 45/121 (37.19%), Postives = 73/121 (60.33%), Query Frame = 2
Query:  410 EKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKT 772
            E+SP   LQ+  + +++AT  F   ++LG+GGFG VFKG +++          G  +AVK L  +  QG +E+  E   + +L H NLV ++G+C+E ++++LVYEF+   SL+  LF  T
Sbjct:  300 EESPKYSLQYDLKTIEAATCTFSKCNMLGQGGFGEVFKGVLQD----------GSEIAVKRLSKESAQGVQEFQNETSLVAKLQHRNLVGVLGFCMEGEEKILVYEFVPNKSLDQFLFEPT 410          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK21_ARATH (Cysteine-rich receptor-like protein kinase 21 OS=Arabidopsis thaliana GN=CRK21 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.451e-17
Identity = 54/151 (35.76%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  311 ATETRYLNASNRELCAPNEAHLSSDNPDPAPTDEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            A+E  Y + S R    P   +  + +PD A  D  +    L+F F+ +K+AT NF   + LG GGFG V+KG             +G  VA K L     QG  E+  EV  + +L H NLV L+G+ +E ++++LVYEF+   SL++ LF
Sbjct:  314 ASENGYFSVSRR----PRRPY-GTASPDDATDDLTASSGSLRFDFRAIKAATSNFHKSNKLGHGGFGAVYKGMFP----------NGTEVAAKRLSKPSDQGEPEFKNEVLLVARLQHKNLVGLLGFSVEGEEKILVYEFVPNKSLDHFLF 449          
The following BLAST results are available for this feature:
BLAST of FC868969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
CRK35_ARATH5.541e-1739.17Putative cysteine-rich receptor-like protein kinas... [more]
CRI4_MAIZE5.541e-1738.31Putative receptor protein kinase CRINKLY4 OS=Zea m... [more]
BRI1_SOLPE5.541e-1743.24Systemin receptor SR160 OS=Solanum peruvianum PE=1... [more]
BRI1_SOLLC5.541e-1743.24Brassinosteroid LRR receptor kinase OS=Solanum lyc... [more]
Y2899_ARATH7.236e-1738.00Probable leucine-rich repeat receptor-like protein... [more]
CRK32_ARATH7.236e-1739.84Putative cysteine-rich receptor-like protein kinas... [more]
Y5596_ARATH9.451e-1740.00Probable LRR receptor-like serine/threonine-protei... [more]
RLK7_ARATH9.451e-1742.86Receptor-like protein kinase At5g59670 OS=Arabidop... [more]
CRK33_ARATH9.451e-1737.19Putative cysteine-rich receptor-like protein kinas... [more]
CRK21_ARATH9.451e-1735.76Cysteine-rich receptor-like protein kinase 21 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC31007B04EF AbioticL1 Citrus clementina cDNA clone C31007B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868969 ID=FC868969; Name=FC868969; organism=Citrus clementina; type=EST; length=783bp
GACTTCACTTCTCTTTTCTCTTTCTTCTTCTATTAAACCAATGGCCAGTC
CCCTCCTCCTCCTCCTCTTGTTTACACTTTGTTTTATCATGCAATTATAT
ATGTAAATTACTACTACTCACTGCAACATGTAACGAAACATAGAAATTAC
AATTAACAAACGAATAAAAAAAATATTAATCTTTCATTTCATGGAAACCA
AGTGCGGTTGCTGGGCTTTTCTTAAACGCGGCGTTAGAGGTTCCTGCAAG
TCCTCTGCTTCTAATCACTCTGCTAACACTATTCCTCGTACTAGTCTTGT
TTATGATGCAGCTACTGAGACGCGATACTTGAATGCTAGTAATCGGGAGC
TATGTGCTCCAAATGAAGCTCACTTGTCCTCGGATAATCCTGATCCAGCT
CCTACAGATGAAAAATCACCATGCCAGCTGCTTCAGTTCACTTTTCAGGA
GCTAAAATCAGCAACTGGAAATTTTAGGCCTGATAGTATTCTTGGGGAGG
GTGGATTTGGATATGTCTTCAAAGGATGGATTGAAGAAAATGGGACAGCT
CCGGCAAAACCCGGGTCGGGAATTACAGTTGCTGTTAAGAGCTTGAAGCC
AGATGGTCTTCAGGGCCATAGAGAATGGGTGGCTGAGGTTGACTTTCTTG
GGCAGCTTCACCATCCTAATCTTGTTAAGCTTATTGGCTACTGCATTGAA
GATGATCAGCGTCTGCTTGTTTATGAATTCATGACTCGTGGTAGTCTTGA
AAATCATCTTTTTCGAAAGACTATACCTCTTCC
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