FC868969

Overview
NameFC868969
Unique NameFC868969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868969_ssr52 microsatellite FC868969_ssr52:52..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK16_ARATH (Putative cysteine-rich receptor-like protein kinase 16 OS=Arabidopsis thaliana GN=CRK16 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 2
Query:  431 LQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            LQF F+ +++AT NF+  + LG GGFG VFKG      T P    +G  VAVK L     QG  E+  EV  + +L H NLV+L+G+ +E ++++LVYE+M   SL+  LF
Sbjct:  321 LQFDFKAIEAATNNFQKSNKLGHGGFGEVFKG------TFP----NGTEVAVKRLSKISGQGEEEFKNEVLLVAKLQHRNLVRLLGFSVEGEEKILVYEYMPNKSLDYFLF 421          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK12_ARATH (Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana GN=CRK12 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 2
Query:  434 QFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKT 772
            Q  F+ ++ AT NF   + LG+GGFG V+KG +           +G  VAVK L     QG +E+  EV  + +L H NLVKL+GYC+E ++++LVYEF+   SL+  LF  T
Sbjct:  354 QLDFKTIEVATENFAKTNKLGQGGFGEVYKGTLV----------NGTEVAVKRLSKTSEQGAQEFKNEVVLVAKLQHRNLVKLLGYCLEPEEKILVYEFVPNKSLDYFLFDPT 456          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: ANX1_ARATH (Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana GN=ANX1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 2
Query:  434 QFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKTIP 778
            +F+  E+K  T NF   +++G GGFG V+KG I+  GT          VAVK   P+  QG  E+  E++ L +L H +LV LIGYC E  +  LVY++M  G+L  HL+    P
Sbjct:  504 RFSLPEIKHGTQNFDDSNVIGVGGFGKVYKGVID--GTTK--------VAVKKSNPNSEQGLNEFETEIELLSRLRHKHLVSLIGYCDEGGEMCLVYDYMAFGTLREHLYNTKKP 608          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: ACCR3_ARATH (Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 42/112 (37.50%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  434 QFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            +F+F EL SATGNF  ++ +G G FG V++G + +      K G  +   +K  +    +    + +E+ FL +LHH +LV+L+GYC E +++LLVY++M  G+L +HL  K
Sbjct:  483 EFSFSELASATGNFSLENKIGSGSFGVVYRGKLNDGREVAIKRGE-VNAKMKKFQ----EKETAFDSEIAFLSRLHHKHLVRLVGYCEEREEKLLVYDYMKNGALYDHLHDK 589          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 42/111 (37.84%), Postives = 67/111 (60.36%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            FTF+EL   T NF   + +G GG+G V+KG      T P    +G  +A+K  +   +QG  E+  E++ L ++HH N+VKL+G+C +  +++LVYE++  GSL + L  K
Sbjct:  622 FTFEELSKCTNNFSDANDVGGGGYGQVYKG------TLP----NGQVIAIKRAQQGSMQGAFEFKTEIELLSRVHHKNVVKLLGFCFDQKEQMLVYEYIPNGSLRDGLSGK 722          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 40/105 (38.10%), Postives = 68/105 (64.76%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLE 751
            +T +EL++AT     ++++GEGG+G V++G + +          G  VAVK+L  +  Q  +E+  EV+ +G++ H NLV+L+GYC+E   R+LVY+F+  G+LE
Sbjct:  142 YTLRELEAATNGLCEENVIGEGGYGIVYRGILTD----------GTKVAVKNLLNNRGQAEKEFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYDFVDNGNLE 236          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 46/112 (41.07%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  434 QFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            +FT+ E+ + T NF  + +LG+GGFG V+ G +  N T          VAVK L     QG++E+ AEV+ L ++HH NLV L+GYC E +   L+YE+M  G L  H+  K
Sbjct:  581 RFTYSEVVTMTNNF--ERVLGKGGFGMVYHGTV--NNTEQ--------VAVKMLSHSSSQGYKEFKAEVELLLRVHHKNLVGLVGYCDEGENLALIYEYMANGDLREHMSGK 680          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: MEE39_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MEE39 OS=Arabidopsis thaliana GN=MEE39 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 54/132 (40.91%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  377 SSDNPDPAPTDEKSPCQLLQFTFQELKSATGNF-RPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            S + P+P    +K      +FT+ E+   T N  RP   LGEGGFG V+ G  + NG+          VAVK L     QG++E+ AEV+ L ++HH NLV L+GYC E D   L+YE+M+ G L  HL  K
Sbjct:  541 SRNKPEPWIKTKKK-----RFTYSEVMEMTKNLQRP---LGEGGFGVVYHG--DLNGSEQ--------VAVKLLSQTSAQGYKEFKAEVELLLRVHHINLVNLVGYCDEQDHFALIYEYMSNGDLHQHLSGK 654          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  443 FQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKTIP 778
            F  +K AT NF     +G GGFG V+KG + +          G  VAVK   P   QG  E+  E++ L Q  H +LV LIGYC E+++ +L+YE+M  G++++HL+   +P
Sbjct:  475 FAAVKDATNNFDESRNIGVGGFGKVYKGELND----------GTKVAVKRGNPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMENGTVKSHLYGSGLP 576          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK37_ARATH (Cysteine-rich receptor-like protein kinase 37 OS=Arabidopsis thaliana GN=CRK37 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = 2
Query:  407 DEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            D  +   +L+F  + + +AT NF  ++ LG+GGFG V+KG +           SG  +AVK L+    QG  E+  EV  L +L H NLVKL+G+C E D+ +LVYEF+   SL++ +F
Sbjct:  323 DSNNGQSMLRFDLRMIVTATNNFSLENKLGQGGFGSVYKGILP----------SGQEIAVKRLRKGSGQGGMEFKNEVLLLTRLQHRNLVKLLGFCNEKDEEILVYEFVPNSSLDHFIF 431          
The following BLAST results are available for this feature:
BLAST of FC868969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
CRK16_ARATH6.126e-1643.24Putative cysteine-rich receptor-like protein kinas... [more]
CRK12_ARATH6.126e-1641.59Putative cysteine-rich receptor-like protein kinas... [more]
ANX1_ARATH6.126e-1640.00Receptor-like protein kinase ANXUR1 OS=Arabidopsis... [more]
ACCR3_ARATH6.126e-1637.50Putative serine/threonine-protein kinase-like prot... [more]
Y5977_ARATH8.000e-1637.84Probable leucine-rich repeat receptor-like protein... [more]
Y1154_ARATH8.000e-1638.10Probable serine/threonine-protein kinase At1g01540... [more]
RLK6_ARATH8.000e-1641.07Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
MEE39_ARATH8.000e-1640.91Probable LRR receptor-like serine/threonine-protei... [more]
HERK_ARATH8.000e-1638.39Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
CRK37_ARATH8.000e-1639.50Cysteine-rich receptor-like protein kinase 37 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC31007B04EF AbioticL1 Citrus clementina cDNA clone C31007B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868969 ID=FC868969; Name=FC868969; organism=Citrus clementina; type=EST; length=783bp
GACTTCACTTCTCTTTTCTCTTTCTTCTTCTATTAAACCAATGGCCAGTC
CCCTCCTCCTCCTCCTCTTGTTTACACTTTGTTTTATCATGCAATTATAT
ATGTAAATTACTACTACTCACTGCAACATGTAACGAAACATAGAAATTAC
AATTAACAAACGAATAAAAAAAATATTAATCTTTCATTTCATGGAAACCA
AGTGCGGTTGCTGGGCTTTTCTTAAACGCGGCGTTAGAGGTTCCTGCAAG
TCCTCTGCTTCTAATCACTCTGCTAACACTATTCCTCGTACTAGTCTTGT
TTATGATGCAGCTACTGAGACGCGATACTTGAATGCTAGTAATCGGGAGC
TATGTGCTCCAAATGAAGCTCACTTGTCCTCGGATAATCCTGATCCAGCT
CCTACAGATGAAAAATCACCATGCCAGCTGCTTCAGTTCACTTTTCAGGA
GCTAAAATCAGCAACTGGAAATTTTAGGCCTGATAGTATTCTTGGGGAGG
GTGGATTTGGATATGTCTTCAAAGGATGGATTGAAGAAAATGGGACAGCT
CCGGCAAAACCCGGGTCGGGAATTACAGTTGCTGTTAAGAGCTTGAAGCC
AGATGGTCTTCAGGGCCATAGAGAATGGGTGGCTGAGGTTGACTTTCTTG
GGCAGCTTCACCATCCTAATCTTGTTAAGCTTATTGGCTACTGCATTGAA
GATGATCAGCGTCTGCTTGTTTATGAATTCATGACTCGTGGTAGTCTTGA
AAATCATCTTTTTCGAAAGACTATACCTCTTCC
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