FC868969

Overview
NameFC868969
Unique NameFC868969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868969_ssr52 microsatellite FC868969_ssr52:52..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKTI 775
            F+  EL+  T NF    I+G GGFG V+ G I++          G  VA+K   P   QG  E+  E+  L +L H +LV LIGYC E+ + +LVYE+M+ G   +HL+ K +
Sbjct:  513 FSLSELQEVTKNFDASEIIGVGGFGNVYIGTIDD----------GTQVAIKRGNPQSEQGITEFHTEIQMLSKLRHRHLVSLIGYCDENAEMILVYEYMSNGPFRDHLYGKNL 615          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15
Identity = 43/110 (39.09%), Postives = 69/110 (62.73%), Query Frame = 2
Query:  440 TFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGL--QGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            + Q L+S T NF  D+ILG GGFG V+KG + +          G  +AVK ++   +  +G  E+ +E+  L ++ H +LV L+GYC++ +++LLVYE+M +G+L  HLF
Sbjct:  577 SIQVLRSVTNNFSSDNILGSGGFGVVYKGELHD----------GTKIAVKRMENGVIAGKGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHLF 676          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK26_ARATH (Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana GN=CRK26 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 2
Query:  386 NPDPAPTDEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            N +    +E      ++F F  L+ AT +F  ++ LGEGGFG V+KG + +          G  +AVK L  +  QG  E+  E   + +L H NLVKL+GY IE  +RLLVYEF+   SL+  +F
Sbjct:  315 NSENKHENENISTDSMKFDFSVLQDATSHFSLENKLGEGGFGAVYKGVLSD----------GQKIAVKRLSKNAQQGETEFKNEFLLVAKLQHRNLVKLLGYSIEGTERLLVYEFLPHTSLDKFIF 430          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK7_ARATH (Cysteine-rich receptor-like protein kinase 7 OS=Arabidopsis thaliana GN=CRK7 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 44/119 (36.97%), Postives = 70/119 (58.82%), Query Frame = 2
Query:  407 DEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            D+K+  + LQ  ++ +++AT +F  ++ +G GGFG V+KG             +G  VAVK L     QG  E+  EV  +  L H NLV+++G+ IE ++R+LVYE++   SL+N LF
Sbjct:  314 DDKTTIESLQLDYRAIQAATNDFSENNKIGRGGFGDVYKGTFS----------NGTEVAVKRLSKTSEQGDTEFKNEVVVVANLRHKNLVRILGFSIEREERILVYEYVENKSLDNFLF 422          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.328e-15
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 2
Query:  452 LKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            +K AT +F  +  +G GGFG V+KG + +          G  VAVK   P   QG  E+  E++ L Q  H +LV LIGYC E+++ +LVYE+M  G+L++HL+
Sbjct:  475 VKEATNSFDENRAIGVGGFGKVYKGELHD----------GTKVAVKRANPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILVYEYMENGTLKSHLY 568          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK27_ARATH (Cysteine-rich receptor-like protein kinase 27 OS=Arabidopsis thaliana GN=CRK27 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.040e-15
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  431 LQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            L F F+ ++ AT +F   + +GEGGFG V+KG + +          G+ +AVK L     QG+ E+  EV  + +L H NLVKL G+ I++ +RLLVYEF+   SL+  LF
Sbjct:  319 LHFDFETIRVATDDFSLTNKIGEGGFGVVYKGHLPD----------GLEIAVKRLSIHSGQGNAEFKTEVLLMTKLQHKNLVKLFGFSIKESERLLVYEFIPNTSLDRFLF 419          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: LRKA1_ARATH (Lectin-domain containing receptor kinase A4.1 OS=Arabidopsis thaliana GN=LECRKA4.1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.186e-15
Identity = 44/112 (39.29%), Postives = 67/112 (59.82%), Query Frame = 2
Query:  443 FQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKTIP 778
            +++L  AT  F+   I+G GGFG VFKG +  +            +AVK + P   QG RE+VAE++ LG+L H NLV L G+C   +  LL+Y+++  GSL++ L+  T+P
Sbjct:  357 YRDLYVATDGFKKTGIIGTGGFGTVFKGKLPNSDP----------IAVKKIIPSSRQGVREFVAEIESLGKLRHKNLVNLQGWCKHKNDLLLIYDYIPNGSLDSLLY--TVP 456          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK40_ARATH (Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana GN=CRK40 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.186e-15
Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  428 LLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            +L+F    +  AT +F  ++ LG+GGFG V+KG      T P    +G  VAVK L     QG  E+  EV  L +L H NLVKL+G+C E D+ +LVYEF+   SL++ +F
Sbjct:  333 MLRFDLGMIVMATDDFSSENTLGQGGFGTVYKG------TFP----NGQEVAVKRLTKGSGQGDMEFKNEVSLLTRLQHKNLVKLLGFCNEGDEEILVYEFVPNSSLDHFIF 434          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK18_ARATH (Cysteine-rich receptor-like protein kinase 18 OS=Arabidopsis thaliana GN=CRK18 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.186e-15
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 2
Query:  419 PCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKT 772
            P + +QF  + ++SAT NF   + LG+GGFG V+KG +           +G  +AVK L     QG  E+  EV  + +L H NLV+L+G+ ++ +++LLVYEF++  SL+  LF  T
Sbjct:  321 PTESVQFDLKTIESATSNFSERNKLGKGGFGEVYKGMLM----------NGTEIAVKRLSKTSGQGEVEFKNEVVVVAKLQHINLVRLLGFSLQGEEKLLVYEFVSNKSLDYFLFDPT 428          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y5613_ARATH (Probable receptor-like protein kinase At5g61350 OS=Arabidopsis thaliana GN=At5g61350 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            F F EL++AT NF  +++ G GGFG V+ G I+           G  VA+K       QG  E+  E+  L +L H +LV LIG+C E+ + +LVYE+M+ G L +HL+
Sbjct:  513 FPFTELQTATQNFDENAVCGVGGFGKVYIGEID----------GGTQVAIKRGSQSSEQGINEFQTEIQMLSKLRHRHLVSLIGFCDENKEMILVYEYMSNGPLRDHLY 611          
The following BLAST results are available for this feature:
BLAST of FC868969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
Y2214_ARATH1.045e-1538.94Probable receptor-like protein kinase At2g21480 OS... [more]
TMK1_ARATH1.045e-1539.09Probable receptor protein kinase TMK1 OS=Arabidops... [more]
CRK26_ARATH1.365e-1538.10Cysteine-rich receptor-like protein kinase 26 OS=A... [more]
CRK7_ARATH1.782e-1536.97Cysteine-rich receptor-like protein kinase 7 OS=Ar... [more]
Y5597_ARATH2.328e-1540.38Probable receptor-like protein kinase At5g59700 OS... [more]
CRK27_ARATH3.040e-1540.54Cysteine-rich receptor-like protein kinase 27 OS=A... [more]
LRKA1_ARATH5.186e-1539.29Lectin-domain containing receptor kinase A4.1 OS=A... [more]
CRK40_ARATH5.186e-1541.96Cysteine-rich receptor-like protein kinase 40 OS=A... [more]
CRK18_ARATH5.186e-1538.14Cysteine-rich receptor-like protein kinase 18 OS=A... [more]
Y5613_ARATH6.773e-1539.45Probable receptor-like protein kinase At5g61350 OS... [more]

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Properties
Property NameValue
Genbank descriptionC31007B04EF AbioticL1 Citrus clementina cDNA clone C31007B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868969 ID=FC868969; Name=FC868969; organism=Citrus clementina; type=EST; length=783bp
GACTTCACTTCTCTTTTCTCTTTCTTCTTCTATTAAACCAATGGCCAGTC
CCCTCCTCCTCCTCCTCTTGTTTACACTTTGTTTTATCATGCAATTATAT
ATGTAAATTACTACTACTCACTGCAACATGTAACGAAACATAGAAATTAC
AATTAACAAACGAATAAAAAAAATATTAATCTTTCATTTCATGGAAACCA
AGTGCGGTTGCTGGGCTTTTCTTAAACGCGGCGTTAGAGGTTCCTGCAAG
TCCTCTGCTTCTAATCACTCTGCTAACACTATTCCTCGTACTAGTCTTGT
TTATGATGCAGCTACTGAGACGCGATACTTGAATGCTAGTAATCGGGAGC
TATGTGCTCCAAATGAAGCTCACTTGTCCTCGGATAATCCTGATCCAGCT
CCTACAGATGAAAAATCACCATGCCAGCTGCTTCAGTTCACTTTTCAGGA
GCTAAAATCAGCAACTGGAAATTTTAGGCCTGATAGTATTCTTGGGGAGG
GTGGATTTGGATATGTCTTCAAAGGATGGATTGAAGAAAATGGGACAGCT
CCGGCAAAACCCGGGTCGGGAATTACAGTTGCTGTTAAGAGCTTGAAGCC
AGATGGTCTTCAGGGCCATAGAGAATGGGTGGCTGAGGTTGACTTTCTTG
GGCAGCTTCACCATCCTAATCTTGTTAAGCTTATTGGCTACTGCATTGAA
GATGATCAGCGTCTGCTTGTTTATGAATTCATGACTCGTGGTAGTCTTGA
AAATCATCTTTTTCGAAAGACTATACCTCTTCC
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