FC868969

Overview
NameFC868969
Unique NameFC868969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868969_ssr52 microsatellite FC868969_ssr52:52..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: WAKLP_ARATH (Wall-associated receptor kinase-like 15 OS=Arabidopsis thaliana GN=WAKL15 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            FT +E+  AT NF   ++LG GGFG VFKG +++          G TVAVK  K    +   + V EV  L Q+ H NLVKL+G CIE +  +LVYEF+  G+L  H++
Sbjct:  342 FTGKEIVKATDNFAKSNLLGFGGFGEVFKGNLDD----------GTTVAVKRAKLGNEKSIYQIVNEVQILCQVSHKNLVKLLGCCIELEMPVLVYEFVPNGTLFEHIY 440          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK30_ARATH (Putative cysteine-rich receptor-like protein kinase 30 OS=Arabidopsis thaliana GN=CRK30 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  407 DEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKTIP 778
            D+ +    LQF  +++++AT NF   + +G+GGFG V+KG +           +G  VAVK L     QG  E+  EV  + +L H NLV+L+G+ ++ ++++LV+EF+   SL+  LF  T P
Sbjct:  324 DDITTVGYLQFDIKDIEAATSNFLASNKIGQGGFGEVYKGTLS----------NGTEVAVKRLSRTSDQGELEFKNEVLLVAKLQHRNLVRLLGFALQGEEKILVFEFVPNKSLDYFLFGSTNP 437          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y1743_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.846e-15
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFL-----GQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKT 772
            FT+ ++  AT NF  + ++G GG+G V++G + +          G  VAVK L+ +G +  +E+ AE++ L     G   HPNLV+L G+C++  +++LV+E+M  GSLE  +  KT
Sbjct:  802 FTYADILKATSNFSEERVVGRGGYGTVYRGVLPD----------GREVAVKKLQREGTEAEKEFRAEMEVLSANAFGDWAHPNLVRLYGWCLDGSEKILVHEYMGGGSLEELITDKT 908          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK11_ARATH (Cysteine-rich receptor-like protein kinase 11 OS=Arabidopsis thaliana GN=CRK11 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.846e-15
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  431 LQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            L + F+ +++AT  F   + LGEGGFG V+KG          K  +G  VAVK L     QG RE+  E   + +L H NLV+L+G+C+E ++++L+YEF+   SL+  LF
Sbjct:  336 LVYDFKTIEAATNKFSTSNKLGEGGFGAVYKG----------KLSNGTDVAVKRLSKKSGQGTREFRNEAVLVTKLQHRNLVRLLGFCLEREEQILIYEFVHNKSLDYFLF 436          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK10_ARATH (Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.846e-15
Identity = 45/132 (34.09%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  368 AHLSSDNPDPAPTDEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            A  S   P     D+ +    LQ  ++ +++AT +F   + +G+GGFG V+KG + +          G  VAVK L     QG  E+  EV  + +L H NLV+L+G+C++ ++R+LVYE++   SL+  LF
Sbjct:  302 ARKSYYTPSAFAGDDITTADSLQLDYRTIQTATDDFVESNKIGQGGFGEVYKGTLSD----------GTEVAVKRLSKSSGQGEVEFKNEVVLVAKLQHRNLVRLLGFCLDGEERVLVYEYVPNKSLDYFLF 423          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y5188_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = 2
Query:  434 QFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            + T+ E+   T NF  + +LG+GGFG V+ G +E+             VAVK L     QG++E+ AEV+ L ++HH NLV L+GYC + D   L+YE+M  G L+ ++  K
Sbjct:  555 RITYPEVLKMTNNF--ERVLGKGGFGTVYHGNLEDT-----------QVAVKMLSHSSAQGYKEFKAEVELLLRVHHRNLVGLVGYCDDGDNLALIYEYMANGDLKENMSGK 653          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.509e-14
Identity = 45/123 (36.59%), Postives = 72/123 (58.54%), Query Frame = 2
Query:  434 QFTFQELK----------SATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKT 772
            ++ F+EL+           AT NF   + LG+GGFG V+KG + +          G  +AVK L    +QG  E++ EV  + +L H NLV+++G CIE D+++L+YE++   SL+++LF KT
Sbjct:  505 EYKFEELELPLIEMETVVKATENFSSCNKLGQGGFGIVYKGRLLD----------GKEIAVKRLSKTSVQGTDEFMNEVTLIARLQHINLVQVLGCCIEGDEKMLIYEYLENLSLDSYLFGKT 617          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CRK39_ARATH (Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.509e-14
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  428 LLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            +L+F    + +AT  F  ++ LG+GGFG V+KG +           +G  VAVK L     QG  E+  EV  L +L H NLVKL+G+C E D+++LVYEF+   SL++ +F
Sbjct:  338 MLRFDLGMVLAATDEFSSENTLGQGGFGTVYKGTLL----------NGQEVAVKRLTKGSGQGDIEFKNEVSLLTRLQHRNLVKLLGFCNEGDEQILVYEFVPNSSLDHFIF 439          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.971e-14
Identity = 41/104 (39.42%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  452 LKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            +K AT +F    ++G GGFG V+KG + +             VAVK   P   QG  E+  EV+ L Q  H +LV LIGYC E+ + ++VYE+M +G+L++HL+
Sbjct:  480 IKEATDDFDESLVIGVGGFGKVYKGVLRDK----------TEVAVKRGAPQSRQGLAEFKTEVEMLTQFRHRHLVSLIGYCDENSEMIIVYEYMEKGTLKDHLY 573          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y1570_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.971e-14
Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 2
Query:  431 LQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            L FTF ++   T NF    +LG+GGFG V+ G+ +            + VAVK L     QG +E+ +EV+ L ++HH NL  LIGY  E DQ  L+YEFM  G++ +HL  K
Sbjct:  558 LLFTFADVIKMTNNF--GQVLGKGGFGTVYHGFYDN-----------LQVAVKLLSETSAQGFKEFRSEVEVLVRVHHVNLTALIGYFHEGDQMGLIYEFMANGNMADHLAGK 657          
The following BLAST results are available for this feature:
BLAST of FC868969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
WAKLP_ARATH6.773e-1543.12Wall-associated receptor kinase-like 15 OS=Arabido... [more]
CRK30_ARATH6.773e-1535.48Putative cysteine-rich receptor-like protein kinas... [more]
Y1743_ARATH8.846e-1535.90Probable LRR receptor-like serine/threonine-protei... [more]
CRK11_ARATH8.846e-1539.64Cysteine-rich receptor-like protein kinase 11 OS=A... [more]
CRK10_ARATH8.846e-1534.09Cysteine-rich receptor-like protein kinase 10 OS=A... [more]
Y5188_ARATH1.155e-1438.39Probable LRR receptor-like serine/threonine-protei... [more]
SRK6_BRAOE1.509e-1436.59Putative serine/threonine-protein kinase receptor ... [more]
CRK39_ARATH1.509e-1440.18Putative cysteine-rich receptor-like protein kinas... [more]
Y2393_ARATH1.971e-1439.42Probable receptor-like protein kinase At2g39360 OS... [more]
Y1570_ARATH1.971e-1440.71Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC31007B04EF AbioticL1 Citrus clementina cDNA clone C31007B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868969 ID=FC868969; Name=FC868969; organism=Citrus clementina; type=EST; length=783bp
GACTTCACTTCTCTTTTCTCTTTCTTCTTCTATTAAACCAATGGCCAGTC
CCCTCCTCCTCCTCCTCTTGTTTACACTTTGTTTTATCATGCAATTATAT
ATGTAAATTACTACTACTCACTGCAACATGTAACGAAACATAGAAATTAC
AATTAACAAACGAATAAAAAAAATATTAATCTTTCATTTCATGGAAACCA
AGTGCGGTTGCTGGGCTTTTCTTAAACGCGGCGTTAGAGGTTCCTGCAAG
TCCTCTGCTTCTAATCACTCTGCTAACACTATTCCTCGTACTAGTCTTGT
TTATGATGCAGCTACTGAGACGCGATACTTGAATGCTAGTAATCGGGAGC
TATGTGCTCCAAATGAAGCTCACTTGTCCTCGGATAATCCTGATCCAGCT
CCTACAGATGAAAAATCACCATGCCAGCTGCTTCAGTTCACTTTTCAGGA
GCTAAAATCAGCAACTGGAAATTTTAGGCCTGATAGTATTCTTGGGGAGG
GTGGATTTGGATATGTCTTCAAAGGATGGATTGAAGAAAATGGGACAGCT
CCGGCAAAACCCGGGTCGGGAATTACAGTTGCTGTTAAGAGCTTGAAGCC
AGATGGTCTTCAGGGCCATAGAGAATGGGTGGCTGAGGTTGACTTTCTTG
GGCAGCTTCACCATCCTAATCTTGTTAAGCTTATTGGCTACTGCATTGAA
GATGATCAGCGTCTGCTTGTTTATGAATTCATGACTCGTGGTAGTCTTGA
AAATCATCTTTTTCGAAAGACTATACCTCTTCC
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