FC868986

Overview
NameFC868986
Unique NameFC868986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_SALSA (Ribosome biogenesis protein wdr12 OS=Salmo salar GN=wdr12 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.245e-24
Identity = 66/176 (37.50%), Postives = 97/176 (55.11%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAE 675
            ++Q RF T  K    V     +IP+      LS+V+N LL+A N       FDFLV G+ +R SL   + A+GIS E V+EIEY++     + EE  +HDDW+S+V+  +  +ILTG YD   ++W   G     + GH   V  V  +K DGL  + + T   DQT+ LW+ ++E
Sbjct:    3 QLQTRFFTDNKK-YSVDDVPFSIPAASEVQELSNVINKLLEAKNGSRSQIEFDFLVQGQFLRTSLSNHMEAEGISTEDVVEIEYVERFTAPQPEECMMHDDWISSVEADSE-WILTGSYDKTAKIWSLEGKAVMTVAGHTDVVKDVAWVKRDGLTSL-LLTASLDQTILLWEWNSE 175          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_PICGU (Ribosome biogenesis protein YTM1 OS=Pichia guilliermondii GN=YTM1 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 67/186 (36.02%), Postives = 99/186 (53.23%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGF--------------ILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWK 663
            +V+VRF T  +   KV  N I +P +L R+GLS +VN+LL     + K+ PFDFLV+G L+R SL+ +L  +G+S E V++++Y +AV P        ++DW+S++D  NPG               IL+G YD + R +   G       GH G V SV  I         + +   D +LRLWK
Sbjct:   18 QVKVRFFTNEEDDLKVSENPIFVPVSLKRYGLSEIVNHLLNDGETK-KAIPFDFLVDGVLLRTSLQDYLTKQGLSTETVIDLQYTRAVLPPSFLASFTNEDWISSIDTINPGHGAVLASNMKLQESKILSGSYDGVVRTYNMSGEVESQYIGHSGPVKSVRWISP-----TRIVSAGNDHSLRLWK 197          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_COCIM (Ribosome biogenesis protein YTM1 OS=Coccidioides immitis GN=YTM1 PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24
Identity = 70/198 (35.35%), Postives = 106/198 (53.54%), Query Frame = 1
Query:  121 EDQNEENSRRVQVRFKTK---LKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAV----DGSNPGFILTGCYDNLGRVWKAGGVCTHILE-----GHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEE 678
            E Q++    + ++RF T+   L  P+   +  I +P+ L R+ LS++VNNLL    P     P +FL+NG  +R S+++FL A GISAE  L++EY++A+ P       LHDDWVS+V    D  N   I++  YD L RVW       H        GH  A+  V  + +  +    V++G  D+T+RLWK   +E
Sbjct:    8 EVQSQTAQTQARLRFSTRDEDLALPES--TGPILVPTGLRRYALSTLVNNLLATEKPV----PLEFLINGTYLRTSVDEFLTANGISAETTLDVEYVRALIPPLHVASFLHDDWVSSVDVLSDSQNEERIISASYDGLLRVWNMSSEIIHTSASAKDGGHQSAIKCVRFLSASQI----VSSGI-DRTVRLWKYTDQE 194          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_BOVIN (Ribosome biogenesis protein WDR12 OS=Bos taurus GN=WDR12 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.007e-23
Identity = 61/176 (34.66%), Postives = 97/176 (55.11%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAE 675
            ++Q RF T  K    V     +IP+      LS+++N LL+A N   K   FDFL+ G+ +RM L + +  + IS+E+V+E+EY++     + E+   HDDW+SA++G+   +ILTG YD   R+W   G     + GH   V  V  +K D L  + ++    DQT+ LW+ + E
Sbjct:    3 QLQTRFFTDNKK-YAVDDVPFSIPAASEIADLSNLINKLLEAKNEFHKHVEFDFLIKGQFLRMPLFKHMELENISSEEVVELEYVEKYTAPQPEQCMFHDDWISAIEGTEE-WILTGSYDKTSRIWSLEGKSIMTIVGHTDVVKDVAWVKKDSLSCLLLSASM-DQTILLWEWNVE 175          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_HUMAN (Ribosome biogenesis protein WDR12 OS=Homo sapiens GN=WDR12 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 60/176 (34.09%), Postives = 96/176 (54.55%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAE 675
            ++Q RF T  K    V     +IP+      LS+++N LL+  N   K   FDFL+ G+ +RM L++ +  + IS+E+V+EIEY++     + E+   HDDW+S++ G+   +ILTG YD   R+W   G     + GH   V  V  +K D L  + ++    DQT+ LW+ + E
Sbjct:    3 QLQTRFYTDNKK-YAVDDVPFSIPAASEIADLSNIINKLLKDKNEFHKHVEFDFLIKGQFLRMPLDKHMEMENISSEEVVEIEYVEKYTAPQPEQCMFHDDWISSIKGAEE-WILTGSYDKTSRIWSLEGKSIMTIVGHTDVVKDVAWVKKDSLSCLLLSASM-DQTILLWEWNVE 175          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_PONAB (Ribosome biogenesis protein WDR12 OS=Pongo abelii GN=WDR12 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.330e-22
Identity = 59/176 (33.52%), Postives = 96/176 (54.55%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAE 675
            ++Q RF T  K    +     +IP+      LS+++N LL+  N   K   FDFL+ G+ +RM L++ +  + IS+E+V+EIEY++     + E+   HDDW+S++ G+   +ILTG YD   R+W   G     + GH   V  V  +K D L  + ++    DQT+ LW+ + E
Sbjct:    3 QLQTRFYTDNKK-YAIDDVPFSIPAASEIADLSNIINKLLKDKNEFHKHVEFDFLIKGQFLRMPLDKHMEMENISSEEVVEIEYVEKYTAPQPEQCMFHDDWISSIKGAEE-WILTGSYDKTSRIWSLEGKSIMTIVGHTDVVKDVAWVKKDSLSCLLLSASM-DQTILLWEWNVE 175          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_IXOSC (Ribosome biogenesis protein WDR12 homolog OS=Ixodes scapularis GN=ISCW009002 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.974e-22
Identity = 66/178 (37.08%), Postives = 98/178 (55.06%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQ--AVNPEWKSEP-FDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVD 669
            ++Q +F TK      VP    +I  + T   LSS++N LL+  + +P+   +P FDFL+NGEL+R++LE+ L  K I  E ++ +EY++   P    +  +HDDWVSAV  S  G IL+GCYDN   +W  A G     + GH G + SV  +         V+T   D+T  LW+ D
Sbjct:    6 QIQAKFFTK-DERYSVPDTPFSIAGSTTPEQLSSLINALLKESSASPDQDEQPAFDFLINGELLRLTLEEHLETKEIPQETIVHLEYLEKCPPPSPVDSLIHDDWVSAVHASEAG-ILSGCYDNTLHIWDTATGTRRLTIPGHLGPIKSVKWVAVAEPPCTFVSTS-HDETAMLWQWD 180          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_RAT (Ribosome biogenesis protein WDR12 OS=Rattus norvegicus GN=Wdr12 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 59/176 (33.52%), Postives = 96/176 (54.55%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAE 675
            ++Q RF T+ K    V     +IP+      LS+++N LL+  N   K   FDFL+ G+ +RM L + +  + IS+E+V+E+EY++     + E+   HDDW+S++ G+   +IL+G YD   R+W   G     + GH   V  V  +K D L  + + T   DQT+ LW+ + E
Sbjct:    3 QLQARFYTENKK-YAVDDVPFSIPATSEVADLSNIINKLLETKNELHKHVEFDFLIKGQFLRMPLVKHMELEDISSEEVVELEYVEKYTAPQPEQCMFHDDWISSIKGAEE-WILSGSYDKTSRIWSLEGKSIMTIVGHTDVVKDVAWVKKDSLSCL-LLTASMDQTILLWEWNIE 175          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_AJECN (Ribosome biogenesis protein YTM1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=YTM1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 73/218 (33.49%), Postives = 114/218 (52.29%), Query Frame = 1
Query:   97 MDMNIETPEDQNEENSRRVQVRFKTKLKPPQK---VPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD--------GS----NPG--FILTGCYDNLGRVWKAGGVCTHILE-----GHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEE 678
            MD   + P D +   S++ Q + + KL    +   +P ++  I +P+ L R+ LS++VNNLL++  P     PF+FL+NG  +R S++++L A GISAE  L++EY++A+ P       LHDDWVSAVD        GS    N G   IL+  YD L R+W        +       GH  +V    ++    +    +++G  D+T+RLWK    E
Sbjct:    1 MDGLEDGPLDASTATSQKPQRQVRLKLTSRHEDIALPESTGPILVPTGLRRYALSTLVNNLLESEKPI----PFEFLINGTYLRTSIDEYLTANGISAETTLDVEYVRALVPPLHVASFLHDDWVSAVDVLSDTSIAGSKSRVNAGQERILSASYDGLLRMWNMSSETIALSPAAREGGHTASVKCARMVSPSQI----ISSGL-DRTVRLWKYTESE 209          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_MOUSE (Ribosome biogenesis protein WDR12 OS=Mus musculus GN=Wdr12 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 57/177 (32.20%), Postives = 98/177 (55.37%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEE 678
            ++Q RF ++ K    V     +IP+      LS+++N LL+  N   K   FDFL+ G+ +R+ L + +  + IS+E+V+E+EY++     + E+   HDDW+S+++G+   +IL+G YD   R+W   G     + GH   V  V  +K D L  + + T   DQT+ LW+ + E+
Sbjct:    3 QLQARFYSENKK-YAVDDVPFSIPAAAEVADLSNIINKLLETKNELHKHVEFDFLIKGQFLRVPLVKHMELENISSEEVVELEYVEKYTAPQPEQCMFHDDWISSIEGAEE-WILSGSYDKTSRIWSLEGKSIMTIVGHTDVVKDVAWVKKDSLSCL-LLTASMDQTVLLWEWNVEK 176          
The following BLAST results are available for this feature:
BLAST of FC868986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
WDR12_SALSA4.245e-2437.50Ribosome biogenesis protein wdr12 OS=Salmo salar G... [more]
YTM1_PICGU7.242e-2436.02Ribosome biogenesis protein YTM1 OS=Pichia guillie... [more]
YTM1_COCIM9.458e-2435.35Ribosome biogenesis protein YTM1 OS=Coccidioides i... [more]
WDR12_BOVIN8.007e-2334.66Ribosome biogenesis protein WDR12 OS=Bos taurus GN... [more]
WDR12_HUMAN1.784e-2234.09Ribosome biogenesis protein WDR12 OS=Homo sapiens ... [more]
WDR12_PONAB2.330e-2233.52Ribosome biogenesis protein WDR12 OS=Pongo abelii ... [more]
WDR12_IXOSC3.974e-2237.08Ribosome biogenesis protein WDR12 homolog OS=Ixode... [more]
WDR12_RAT5.190e-2233.52Ribosome biogenesis protein WDR12 OS=Rattus norveg... [more]
YTM1_AJECN1.510e-2133.49Ribosome biogenesis protein YTM1 OS=Ajellomyces ca... [more]
WDR12_MOUSE1.510e-2132.20Ribosome biogenesis protein WDR12 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC31007C09EF AbioticL1 Citrus clementina cDNA clone C31007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868986 ID=FC868986; Name=FC868986; organism=Citrus clementina; type=EST; length=736bp
GAGATTCCCTCCTCTTTAACTTCACCCTAGCTCAATCTGTGATTCCGCAA
ATTAACTTCATCCCATTAAAAATTAAAAAACCGAAAAAAAGGGCAAATGG
ACATGAACATCGAAACACCGGAAGATCAAAATGAGGAAAATTCGAGGCGC
GTTCAAGTTCGCTTCAAAACGAAGCTAAAACCTCCGCAAAAAGTTCCAAG
CAACTCAATTGCAATCCCTTCTAATCTTACTCGCTTCGGTCTATCTTCTG
TCGTGAACAACTTGCTACAAGCAGTGAATCCTGAGTGGAAATCTGAGCCG
TTTGATTTTTTGGTCAATGGGGAACTGGTTCGGATGTCGCTTGAGCAGTT
TCTTCTCGCCAAGGGCATTTCTGCGGAAAAAGTTCTGGAAATTGAGTACA
TAAAGGCTGTGGCACCACAAAAAGAGGAAGAACCATCTTTACATGATGAC
TGGGTCAGTGCAGTTGATGGTTCTAATCCTGGGTTCATCTTAACTGGTTG
CTATGATAATTTGGGAAGGGTCTGGAAAGCAGGTGGAGTGTGTACACATA
TATTGGAAGGACACTGTGGTGCAGTCTCTTCTGTTAATATCATTAAGTCT
GATGGTTTGAAATATGTCACTGTAGCCACTGGCTTCAAAGATCAGACCTT
GAGATTGTGGAAAGTTGATGCAGAGGAGCTAGTTAATCATCCTAAGAGAT
AAGGTCATTCAAAATTTACGTGGGCATAAGCATCTG
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