FC868987

Overview
NameFC868987
Unique NameFC868987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9437 contig Ccv1_Contig9437:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868987 vs. ExPASy Swiss-Prot
Match: PPM1A_RAT (Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 52/165 (31.52%), Postives = 71/165 (43.03%), Query Frame = 3
Query:  210 GIRWGSVSLQGLREEMEDG--AVIQ-SDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKGLQEAFENADMKLLNWLEMNAEEDESGATATVVFIGRDILFISHIGDCCVVLSRTGKADVLTNPHRPYGSSQVSLQEIRRIREAGG 695
            G+R+G  S+QG R EMED   AVI    GL+ +SF AV+DGH G    K+  + L                   + +K G++  F   D  +    E     D SG+TA  V I     +  + GD   +L R  K    T  H+P         E  RI+ AGG
Sbjct:   21 GLRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNP-----LEKERIQNAGG 180          
BLAST of FC868987 vs. ExPASy Swiss-Prot
Match: PPM1A_RABIT (Protein phosphatase 1A OS=Oryctolagus cuniculus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 52/165 (31.52%), Postives = 71/165 (43.03%), Query Frame = 3
Query:  210 GIRWGSVSLQGLREEMEDG--AVIQ-SDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKGLQEAFENADMKLLNWLEMNAEEDESGATATVVFIGRDILFISHIGDCCVVLSRTGKADVLTNPHRPYGSSQVSLQEIRRIREAGG 695
            G+R+G  S+QG R EMED   AVI    GL+ +SF AV+DGH G    K+  + L                   + +K G++  F   D  +    E     D SG+TA  V I     +  + GD   +L R  K    T  H+P         E  RI+ AGG
Sbjct:   21 GLRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNP-----LEKERIQNAGG 180          
BLAST of FC868987 vs. ExPASy Swiss-Prot
Match: PPM1A_MOUSE (Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 52/165 (31.52%), Postives = 71/165 (43.03%), Query Frame = 3
Query:  210 GIRWGSVSLQGLREEMEDG--AVIQ-SDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKGLQEAFENADMKLLNWLEMNAEEDESGATATVVFIGRDILFISHIGDCCVVLSRTGKADVLTNPHRPYGSSQVSLQEIRRIREAGG 695
            G+R+G  S+QG R EMED   AVI    GL+ +SF AV+DGH G    K+  + L                   + +K G++  F   D  +    E     D SG+TA  V I     +  + GD   +L R  K    T  H+P         E  RI+ AGG
Sbjct:   21 GLRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFRGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNP-----LEKERIQNAGG 180          
BLAST of FC868987 vs. ExPASy Swiss-Prot
Match: P2C07_ORYSJ (Probable protein phosphatase 2C 7 OS=Oryza sativa subsp. japonica GN=Os01g0618200 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 46/163 (28.22%), Postives = 76/163 (46.63%), Query Frame = 3
Query:  222 GSVSLQGLREEMEDGAVIQSDGLDG--FSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKGLQEAFENADMKLLNWLEMNAEEDESGATATVVFIGRDILFISHIGDCCVVLSRTGKADVLTNPHRPYGSSQVSLQEIRRIREAGGWIS 704
            G  S +G R  MED   I+S  +D    +   +FDGHGG    + L+  L++         LL         K  + E +   D   L+  E N   ++    +T +F+G  I +++++GD   V+S+ GKA  L++ H+P         E +RI  AGG ++
Sbjct:  117 GYSSFRGRRANMEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHLKKHLFEN--------LLKHPSFITDTKSAISETYRKTDSDFLD-AETNINREDGSTASTAIFVGNHI-YVANVGDSRTVMSKAGKAIALSSDHKPNRK-----DERKRIENAGGVVT 264          
BLAST of FC868987 vs. ExPASy Swiss-Prot
Match: ILKAP_MOUSE (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Mus musculus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 52/182 (28.57%), Postives = 86/182 (47.25%), Query Frame = 3
Query:  198 SGVAGIRWGSVSLQGLREEMEDGAVIQSDG----------LDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKGLQEAFENADMKLLNWLEMNAEEDESGATATVVFIGRDILFISHIGDCCVVLSRTGK------ADVLTNPHRPYGSSQVSLQEIRRIREAGG 695
            S + G++      +G REEM+D  VI +D           +   S+ AVFDGHGG+   KF    L++  +     G ++S +    +K+ L + F++ D + L          + G+TAT V    +IL+I+++GD   +L R  +      A  L+  H P        +E  RI++AGG
Sbjct:  102 SVIFGLKGYVAERKGEREEMQDAHVILNDITQECNPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDIISVEK--TVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNP-----TQYEERMRIQKAGG 276          
BLAST of FC868987 vs. ExPASy Swiss-Prot
Match: ILKAP_RAT (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Rattus norvegicus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 52/182 (28.57%), Postives = 86/182 (47.25%), Query Frame = 3
Query:  198 SGVAGIRWGSVSLQGLREEMEDGAVIQSDG----------LDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKGLQEAFENADMKLLNWLEMNAEEDESGATATVVFIGRDILFISHIGDCCVVLSRTGK------ADVLTNPHRPYGSSQVSLQEIRRIREAGG 695
            S + G++      +G REEM+D  VI +D           +   S+ AVFDGHGG+   KF    L++  +     G ++S +    +K+ L + F++ D + L          + G+TAT V    +IL+I+++GD   +L R  +      A  L+  H P        +E  RI++AGG
Sbjct:  102 SVIFGLKGYVAERKGEREEMQDAHVILNDITQECNPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDVISVEK--TVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNP-----TQYEERMRIQKAGG 276          
BLAST of FC868987 vs. ExPASy Swiss-Prot
Match: ILKAP_HUMAN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Homo sapiens GN=ILKAP PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 52/182 (28.57%), Postives = 86/182 (47.25%), Query Frame = 3
Query:  198 SGVAGIRWGSVSLQGLREEMEDGAVIQSDGLDG----------FSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKGLQEAFENADMKLLNWLEMNAEEDESGATATVVFIGRDILFISHIGDCCVVLSRTGK------ADVLTNPHRPYGSSQVSLQEIRRIREAGG 695
            S + G++      +G REEM+D  VI +D  +            S+ AVFDGHGG+   KF    L++  +     G ++S +    +K+ L + F++ D + L          + G+TAT V    +IL+I+++GD   +L R  +      A  L+  H P        +E  RI++AGG
Sbjct:  102 SVIFGLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDVISVEK--TVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNP-----TQYEERMRIQKAGG 276          
The following BLAST results are available for this feature:
BLAST of FC868987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PPM1A_RAT6.521e-1131.52Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm... [more]
PPM1A_RABIT6.521e-1131.52Protein phosphatase 1A OS=Oryctolagus cuniculus GN... [more]
PPM1A_MOUSE6.521e-1131.52Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE... [more]
P2C07_ORYSJ6.521e-1128.22Probable protein phosphatase 2C 7 OS=Oryza sativa ... [more]
ILKAP_MOUSE6.521e-1128.57Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_RAT8.517e-1128.57Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_HUMAN8.517e-1128.57Integrin-linked kinase-associated serine/threonine... [more]

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Properties
Property NameValue
Genbank descriptionC31007C10EF AbioticL1 Citrus clementina cDNA clone C31007C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868987 ID=FC868987; Name=FC868987; organism=Citrus clementina; type=EST; length=705bp
GGAACTCACTCCTTCAAACTCGCTGAGTCAGTCAATTAATGGCGTTGCTG
AACCAACAGTTACAGAGGTTTCTCTTAACAAGGCTCAACTATAACTTCAA
GCCCACCGTCAAAAACAACCTTGTCAATACAACAACAGCAAGAGCTAAAA
GCCAGTGCTACTGCTCGGCGATTGCAATAGACGCGCCGTCTTCGTTCAGT
GGTGTTGCCGGAATCCGATGGGGGTCTGTAAGTTTACAGGGCCTACGTGA
GGAAATGGAGGATGGTGCTGTTATTCAATCGGATGGCCTTGATGGGTTCT
CTTTTGCAGCTGTTTTTGATGGCCATGGTGGAGTCTCTACTGTCAAGTTT
CTTAGGGATGAGCTATACAAAGAATGTGTTGCAGCTTTACAAGGAGGATT
GCTGTTGAGTGGAAAAGATTTTGATGCCATTAAGAAGGGATTACAGGAGG
CTTTTGAAAATGCTGATATGAAATTGTTGAATTGGCTTGAAATGAATGCG
GAGGAGGATGAATCTGGTGCAACCGCTACTGTTGTGTTCATTGGAAGGGA
TATTTTGTTCATCTCACATATTGGTGACTGTTGTGTGGTTCTATCTCGTA
CTGGAAAAGCAGATGTATTGACTAATCCTCATCGGCCTTATGGAAGCAGC
CAGGTCTCACTTCAGGAAATTAGAAGAATCAGAGAAGCGGGCGGATGGAT
TTCCA
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