FC868992

Overview
NameFC868992
Unique NameFC868992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868992_ssr116 microsatellite FC868992_ssr116:116..127. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9438 contig Ccv1_Contig9438:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868992 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.423e-37
Identity = 74/140 (52.86%), Postives = 95/140 (67.86%), Query Frame = 1
Query:  271 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF 690
            W+ L  +LL +IL  +EA    WP RR VVACA VCR WR +   +V+ P  SG +TFP S+KQPGPRD  +QCFIKRN+   T+ LYL LT  L DD KFLLAAR+CRR    +Y I+++SD +  GS + +G L+SNF
Sbjct:   51 WSALVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPSSLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLTQELTDDEKFLLAARRCRRGLHKEYAITINSDGLFHGSQSCVGNLKSNF 190          
BLAST of FC868992 vs. ExPASy Swiss-Prot
Match: TLP10_ORYSJ (Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.204e-36
Identity = 69/141 (48.94%), Postives = 101/141 (71.63%), Query Frame = 1
Query:  271 WANLPQELLREILAKIEAADSA-WPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF 690
            W  L  EL+ E++ ++EA+    WP+R+ +V+CA VCR WR+    +V+    SG +TFP S+KQPGP+D+ +QCF+KRN+    ++LYL L N   D GKFL+AAR+ RR   T+Y+ISL +DD+S+GS+ Y+GKLRS+F
Sbjct:   24 WGGLLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKKSMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDF 164          
BLAST of FC868992 vs. ExPASy Swiss-Prot
Match: TLP4_ARATH (Putative Tubby-like protein 4 OS=Arabidopsis thaliana GN=TULP4 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.022e-27
Identity = 53/86 (61.63%), Postives = 71/86 (82.56%), Query Frame = 1
Query:  280 LPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYL 537
            +P ELLR++L +IE ++  WPSR++VV+C GVC++WRQI KEIV VPE+S   TFPIS+KQPGP   L+QC++KRNRS QT++LYL
Sbjct:    1 MPPELLRDVLMRIERSEDTWPSRKNVVSCVGVCKNWRQIFKEIVNVPEVSSKFTFPISLKQPGPGGSLVQCYVKRNRSNQTFYLYL 86          
The following BLAST results are available for this feature:
BLAST of FC868992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TLP2_ORYSJ1.423e-3752.86Tubby-like F-box protein 2 OS=Oryza sativa subsp. ... [more]
TLP10_ORYSJ1.204e-3648.94Tubby-like F-box protein 10 OS=Oryza sativa subsp.... [more]
TLP4_ARATH1.022e-2761.63Putative Tubby-like protein 4 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC31007D03EF AbioticL1 Citrus clementina cDNA clone C31007D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868992 ID=FC868992; Name=FC868992; organism=Citrus clementina; type=EST; length=714bp
AGCACAAGCACAAGCACTGCTCCTCTCGACCCTAATCTCTATCTGAATTC
TCATCATCTCTCAAGTATTCTTCAGTCACCCAACAACCTCACCAACAAAT
CATAAAGCCTTCTCAAAATAAATAAATATTGAAATTAGAATTAAATCTCG
ACGGCTTCGTGTATGACAATAAAAAGCATAATTCATGACATGATGTGGCG
GAGGTCGCACCGCGTGGTCGGCGACGCGGCGGACCACGACATGGCCGGCG
GCTCTTCTCCTACGTGCTGCTGGGCGAACCTGCCGCAGGAGCTGCTGAGA
GAGATTCTGGCCAAAATCGAGGCGGCGGATAGCGCGTGGCCGTCACGGAG
AAGCGTTGTCGCGTGCGCTGGAGTTTGTCGGAGCTGGAGACAGATCACTA
AAGAGATCGTCAAAGTTCCTGAACTTTCCGGTTACTTGACTTTCCCCATC
TCCGTCAAACAGCCTGGTCCAAGGGATTATCTCCTCCAGTGCTTTATAAA
GCGAAATCGGTCCACCCAAACATATCACCTTTACCTCAGTTTAACTAATG
CACTAGCAGACGATGGAAAGTTCCTTCTTGCTGCCCGCAAGTGTAGACGT
GCCACCTGTACAGATTATATTATCTCTTTACATTCTGATGATATGTCAAA
AGGGAGCAGCACTTATCTTGGGAAACTGAGATCAAATTTTTAGGAACCAG
TTCATAGTCTATGA
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