FC868994

Overview
NameFC868994
Unique NameFC868994
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length456
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig451 contig Ccv1_Contig451:38..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 7.924e-42
Identity = 84/152 (55.26%), Postives = 110/152 (72.37%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 456
            +F++  K K++KDIS + +AL +LR  CERAKR LSS  Q  +EI+SL++G+DF   +TRARFEELN DLFRK M PV+K + DA + KS + ++VLVGGSTRIPKVQQLL+DFF GKE  K +NPDE           ILSGEG ++ +D+
Sbjct:  271 YFIKLIKKKHQKDISKDNKALGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDFFEGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDI 422          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.035e-41
Identity = 84/152 (55.26%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 456
            +F++  K K  KDIS + RAL +LR   ERAKR LS+  Q  +EI+SL++G DF   +TRARFEELN DLFRK M PV+K + DA ++KS +H++VLVGGSTRIPKVQQLL+D+FNGKE  K +NPDE           ILSGEG ++ +D+
Sbjct:  269 YFIKLIKKKYSKDISKDNRALGKLRREAERAKRALSNQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKSQIHEIVLVGGSTRIPKVQQLLKDYFNGKEPNKGVNPDEAVAFGAAVQGSILSGEGGDETKDI 420          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 3.932e-41
Identity = 83/152 (54.61%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 456
            +F++  K K  KDIS + RAL +LR   ERAKR LS+  Q  +EI+SL++G DF   +TRARFEELN DLFRK M PV+K + DA ++KS +H++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDE           ILSGEG ++ +D+
Sbjct:  269 YFIKLIKKKYSKDISKDNRALGKLRREAERAKRALSNQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKSQIHEIVLVGGSTRIPKVQQLLRDYFDGKEPNKGVNPDEAVAFGAAVQGSILSGEGGDETKDI 420          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.932e-41
Identity = 83/152 (54.61%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 456
            +F++  K K++KDIS + +AL +LR  CERAKR LSS  Q  +EI+SL++G+D    +TRARFEELN DLFRK M PV+K + DA + KS + ++VLVGGSTRIPKVQQLL+DFF GKE  K +NPDE           ILSGEG ++ +D+
Sbjct:  271 YFIKLIKKKHQKDISKDNKALGKLRRECERAKRALSSQHQVRVEIESLFDGVDLSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDFFEGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDI 422          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: BIP5_TOBAC (Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.144e-40
Identity = 82/152 (53.95%), Postives = 110/152 (72.37%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 456
            +F++  K K+ KDIS + RAL +LR   ERAKR LSS  Q  +EI+SL++G+DF   +TRARFEELN DLFRK M PV+K + DA ++K+ + ++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDE           ILSGEG ++ +D+
Sbjct:  272 YFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDI 423          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.952e-40
Identity = 82/152 (53.95%), Postives = 110/152 (72.37%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 456
            +F++  K K+ KDIS + RAL +LR   ERAKR LSS  Q  +EI+SL++G+DF   +TRARFEELN DLFRK M PV+K + DA ++K+ + ++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDE           ILSGEG ++ +D+
Sbjct:  273 YFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLEKTQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDI 424          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: BIP_SOLLC (Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 4.348e-40
Identity = 82/152 (53.95%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 456
            +F++  K K+ KDIS + RAL +LR   ERAKR+LSS  Q  +EI+SL++G DF   +TRARFEELN DLFRK M PV+K + DA + K+ + ++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDE           ILSGEG ++ +D+
Sbjct:  272 YFIKLIKKKHGKDISKDNRALGKLRREAERAKRSLSSQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLQKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPSKGVNPDEAVAYGAAVQGGILSGEGGDETKDI 423          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: GRP78_PICAN (78 kDa glucose-regulated protein homolog OS=Pichia angusta GN=BiP PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.265e-39
Identity = 82/152 (53.95%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 456
            HF++ FK K+  DIS N +AL +L+   E+AKRTLSS   T IEIDS  +GIDF  +++RA+FEELNMDLF+K ++PV++ L DAKM    + DVV VGGSTRIPKVQ+L+++FFNGK++ K INPDE           +LSGE  E V+D+
Sbjct:  275 HFIKVFKKKHGIDISDNSKALAKLKREVEKAKRTLSSQMSTRIEIDSFVDGIDFSESLSRAKFEELNMDLFKKTLKPVQQVLDDAKMKPDEIDDVVFVGGSTRIPKVQELIENFFNGKKISKGINPDEAVAFGAAVQGGVLSGE--EGVEDI 424          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 3.681e-39
Identity = 79/144 (54.86%), Postives = 103/144 (71.53%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 432
            HF++ +K K  KDI  + RA+++LR   E+AKR LS + Q  IEI+S +EG DF  T+TRA+FEELN+DLFR  ++PV+K L DA M+K  VH++VLVGGSTRIPKVQQL++DFF GKE  + INPDE           +LSGE
Sbjct:  265 HFIKLYKKKKGKDIRKDNRAVQKLRREVEKAKRALSGSHQVRIEIESFFEGDDFSETLTRAKFEELNLDLFRSTLKPVQKVLEDADMNKKDVHEIVLVGGSTRIPKVQQLVKDFFGGKEPSRGINPDEAVAYGAAVQAGVLSGE 408          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: GRP78_KLULA (78 kDa glucose-regulated protein homolog OS=Kluyveromyces lactis GN=GRP78 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 3.681e-39
Identity = 80/152 (52.63%), Postives = 107/152 (70.39%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 456
            HF Q F+ K+  D++ N +A+ +L+   E+AKR+LSS   T IEIDS + GIDF  T+TRA+FEELN+ LF+K ++PVEK L+D+ + K  + D+VLVGGSTRIPKVQQLL+ FFNGK+  K INPDE           +LSGE  E V+D+
Sbjct:  286 HFAQLFQKKHDLDVTKNDKAMAKLKREAEKAKRSLSSQTSTRIEIDSFFNGIDFSETLTRAKFEELNLALFKKTLKPVEKVLKDSGLQKEDIDDIVLVGGSTRIPKVQQLLEKFFNGKKASKGINPDEAVAYGAAVQAGVLSGE--EGVEDI 435          
The following BLAST results are available for this feature:
BLAST of FC868994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BIP1_ARATH7.924e-4255.26Luminal-binding protein 1 OS=Arabidopsis thaliana ... [more]
BIP3_MAIZE1.035e-4155.26Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]
BIP2_MAIZE3.932e-4154.61Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
BIP2_ARATH3.932e-4154.61Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
BIP5_TOBAC1.144e-4053.95Luminal-binding protein 5 OS=Nicotiana tabacum GN=... [more]
BIP4_TOBAC1.952e-4053.95Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]
BIP_SOLLC4.348e-4053.95Luminal-binding protein OS=Solanum lycopersicum PE... [more]
GRP78_PICAN1.265e-3953.9578 kDa glucose-regulated protein homolog OS=Pichia... [more]
HSP7C_DROME3.681e-3954.86Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]
GRP78_KLULA3.681e-3952.6378 kDa glucose-regulated protein homolog OS=Kluyve... [more]

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Properties
Property NameValue
Genbank descriptionC31007D05EF AbioticL1 Citrus clementina cDNA clone C31007D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868994 ID=FC868994; Name=FC868994; organism=Citrus clementina; type=EST; length=456bp
CATTTTGTTCAGGAGTTTAAGTCGAAGAACAAGAAGGATATTAGTGGCAA
CCCTAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGA
CTCTCTCCTCTACTGCCCAGACTACAATTGAGATTGATTCTTTGTATGAG
GGTATTGACTTCTACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAA
CATGGATCTCTTCAGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGG
ATGCTAAGATGGACAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGT
TCCACTAGGATTCCCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGG
CAAGGAGCTCTGCAAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTG
CTGCTGTTCAGGCTGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAG
GATCTG
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