FC868994

Overview
NameFC868994
Unique NameFC868994
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length456
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: DNAK_XANC8 (Chaperone protein dnaK OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 432
            + V EF      D+  +P AL+RL+ A ERAK  LS++ QT + +  +             +TRA+ E L  DL +K +EP    L DA +  S +++V+LVGG TR+PKVQQ + DFF GKE  K++NPDE           +L+G+
Sbjct:  240 YLVDEFNKDQGIDLRKDPLALQRLKDAAERAKIELSTSQQTEVNLPYVTADASGPKHLNIKLTRAKLEALVEDLVKKSIEPCRTALNDAGLRASDINEVILVGGQTRMPKVQQAVADFF-GKEPRKDVNPDEAVAVGAAIQGGVLAGD 386          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: DNAK_VESOH (Chaperone protein dnaK OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 54/148 (36.49%), Postives = 85/148 (57.43%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 432
            + V EFK     D++ +P AL+RL+ A E+AK  LSS+ QT + +  +             ITRA+ E L  DL ++ +EP +  L+DA +    + +V+LVGG TR+PKV +++Q+FF+ KE  K++NPDE           +L G+
Sbjct:  240 YLVDEFKKDQGVDLTNDPMALQRLKEAAEKAKIELSSSEQTEVNLPYVTADASGPKHLNIKITRAKLESLVEDLLKRTIEPCKTALKDADLSTGDIDEVILVGGQTRMPKVTKMVQNFFD-KEPKKDVNPDEAVAMGAAIQAGVLGGD 386          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: DNAK_THEM4 (Chaperone protein dnaK OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 56/153 (36.60%), Postives = 87/153 (56.86%), Query Frame = 1
Query:   10 QEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE---IDSLYEG-IDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 456
            +EFK ++  D+  + +AL+RLR A E+AK  LSS  +T I    I +  EG +     +TR+ FE L  DL     +P+E+ L DAK+    + +++LVGG TR+P +Q  +++ F GKE  K +NPDE           IL+GE   + +D+
Sbjct:  219 EEFKKQHGVDLKEDKQALQRLRDAAEKAKIELSSKLETDISLPYITATAEGPLHLEMRLTRSMFESLTRDLVEMTRKPIEQALSDAKLKPEDIDEIILVGGMTRVPMIQNFIKEIF-GKEPNKRVNPDEAVAMGAAIQAAILAGEEGAQGKDI 370          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: DNAK_SHELP (Chaperone protein dnaK OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 54/148 (36.49%), Postives = 85/148 (57.43%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 432
            +   EFK +   D+  +P A++RL+ A E+AK  LSST QT + +  +             ITRA+ E L  DL ++ +EP++  L DA +  S +++V+LVGG TR+PKV+  +  FF GKEL +++NPDE           +L+G+
Sbjct:  238 YLADEFKKEQSLDLRNDPLAMQRLKEAAEKAKIELSSTTQTEVNLPYITADATGPKHLVVKITRAKLESLVEDLIQRSLEPLKVALADADLSVSDINEVILVGGQTRMPKVRAEVSAFF-GKELRQDVNPDEAVAIGAAVQAGVLAGD 384          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: DNAK_RICRS (Chaperone protein dnaK OS=Rickettsia rickettsii (strain Sheila Smith) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDE 384
            H +  FK +N  D+S +P AL+RL+ A E+AK+ LSS   T I +  +              TRA  E+L  DL  K +EP  K L+DA    S + +VVLVGG TR+PKVQ+ ++ FF G+E  K +NPDE
Sbjct:  233 HLIDVFKKENGIDLSKDPLALQRLKEAAEKAKKELSSAVTTDINLPYITADSSGPKHLNIKFTRAELEKLVDDLIEKTIEPCRKALQDAGFKASDIQEVVLVGGMTRMPKVQEAVKKFF-GREPHKGVNPDE 363          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: DNAK_RICRO (Chaperone protein dnaK OS=Rickettsia rickettsii (strain Iowa) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDE 384
            H +  FK +N  D+S +P AL+RL+ A E+AK+ LSS   T I +  +              TRA  E+L  DL  K +EP  K L+DA    S + +VVLVGG TR+PKVQ+ ++ FF G+E  K +NPDE
Sbjct:  233 HLIDVFKKENGIDLSKDPLALQRLKEAAEKAKKELSSAVTTDINLPYITADSSGPKHLNIKFTRAELEKLVDDLIEKTIEPCRKALQDAGFKASDIQEVVLVGGMTRMPKVQEAVKKFF-GREPHKGVNPDE 363          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: DNAK_RICCN (Chaperone protein dnaK OS=Rickettsia conorii GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDE 384
            H +  FK +N  D+S +P AL+RL+ A E+AK+ LSS   T I +  +              TRA  E+L  DL  K +EP  K L+DA    S + +VVLVGG TR+PKVQ+ ++ FF G+E  K +NPDE
Sbjct:  233 HLIDVFKKENGIDLSKDPLALQRLKEAAEKAKKELSSAVTTDINLPYITADSSGPKHLNIKFTRAELEKLVDDLIEKTIEPCRKALQDAGFKASDIQEVVLVGGMTRMPKVQEAVKKFF-GREPHKGVNPDE 363          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: DNAK_PSEE4 (Chaperone protein dnaK OS=Pseudomonas entomophila (strain L48) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 56/148 (37.84%), Postives = 83/148 (56.08%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 432
            + V EFK ++  D+  +P AL+RL+ A E+AK  LSS   T + +  +             I+RA+ E L  DL  + +EP    L+DA +D S + DV+LVGG TR+P VQ+ + DFF GKE  K++NPDE           +L+G+
Sbjct:  239 YLVDEFKKESGMDLKNDPLALQRLKEAAEKAKIELSSAQSTDVNLPYITADATGPKHLNVKISRAKLEALVEDLVTRTIEPCRIALKDAGIDASKIDDVILVGGQTRMPMVQKAVADFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD 385          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: DNAK_JANMA (Chaperone protein dnaK OS=Janthinobacterium sp. (strain Marseille) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 58/150 (38.67%), Postives = 87/150 (58.00%), Query Frame = 1
Query:    1 HFVQEFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG------IDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 432
            + + EFK  N  D+S +  AL+R++ + ERAK  LSS+ QT  EI+  Y        +     ITRA+ E L  +L  K +EP    ++DA +  S + D++LVGG TR+PKVQ+ ++DFF GK+  K++NPDE           +LSG+
Sbjct:  240 YIIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQT--EINEPYIAMANGAPVHLNLKITRAKLESLVEELISKTIEPCRTAIKDAGVKVSDIDDIILVGGMTRMPKVQETVKDFF-GKDPRKDVNPDEAVAVGAAIQGSVLSGD 386          
BLAST of FC868994 vs. ExPASy Swiss-Prot
Match: DNAK_HELPH (Chaperone protein dnaK OS=Helicobacter pylori (strain HPAG1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 55/144 (38.19%), Postives = 83/144 (57.64%), Query Frame = 1
Query:   13 EFKSKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 432
            EFKS+   +I  +  AL+RL+ A E AK+ LSS  +T I +  +             +TRA+FE L  DL  + +  +E  ++DA + K+ + +VV+VGGSTRIPKVQ+ ++ F N KEL K++NPDE           +L G+
Sbjct:  237 EFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLTRAKFESLTEDLMEETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KELNKSVNPDEVVAVGASIQGGVLKGD 379          
The following BLAST results are available for this feature:
BLAST of FC868994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_XANC83.827e-2038.51Chaperone protein dnaK OS=Xanthomonas campestris p... [more]
DNAK_VESOH3.827e-2036.49Chaperone protein dnaK OS=Vesicomyosocius okutanii... [more]
DNAK_THEM43.827e-2036.60Chaperone protein dnaK OS=Thermosipho melanesiensi... [more]
DNAK_SHELP3.827e-2036.49Chaperone protein dnaK OS=Shewanella loihica (stra... [more]
DNAK_RICRS3.827e-2042.42Chaperone protein dnaK OS=Rickettsia rickettsii (s... [more]
DNAK_RICRO3.827e-2042.42Chaperone protein dnaK OS=Rickettsia rickettsii (s... [more]
DNAK_RICCN3.827e-2042.42Chaperone protein dnaK OS=Rickettsia conorii GN=dn... [more]
DNAK_PSEE43.827e-2037.84Chaperone protein dnaK OS=Pseudomonas entomophila ... [more]
DNAK_JANMA3.827e-2038.67Chaperone protein dnaK OS=Janthinobacterium sp. (s... [more]
DNAK_HELPH3.827e-2038.19Chaperone protein dnaK OS=Helicobacter pylori (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31007D05EF AbioticL1 Citrus clementina cDNA clone C31007D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868994 ID=FC868994; Name=FC868994; organism=Citrus clementina; type=EST; length=456bp
CATTTTGTTCAGGAGTTTAAGTCGAAGAACAAGAAGGATATTAGTGGCAA
CCCTAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGA
CTCTCTCCTCTACTGCCCAGACTACAATTGAGATTGATTCTTTGTATGAG
GGTATTGACTTCTACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAA
CATGGATCTCTTCAGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGG
ATGCTAAGATGGACAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGT
TCCACTAGGATTCCCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGG
CAAGGAGCTCTGCAAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTG
CTGCTGTTCAGGCTGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAG
GATCTG
back to top