FC868997

Overview
NameFC868997
Unique NameFC868997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868997_ssr18 microsatellite FC868997_ssr18:18..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:8..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868997 vs. ExPASy Swiss-Prot
Match: HS90B_MOUSE (Heat shock protein HSP 90-beta OS=Mus musculus GN=Hsp90ab1 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 9.568e-43
Identity = 87/114 (76.32%), Postives = 101/114 (88.60%), Query Frame = 2
Query:  119 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 460
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I I+P+    +L+++D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDILPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 124          
BLAST of FC868997 vs. ExPASy Swiss-Prot
Match: HSP90_ASPFU (Heat shock protein 90 OS=Aspergillus fumigatus GN=hsp90 PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 1.632e-42
Identity = 87/113 (76.99%), Postives = 102/113 (90.27%), Query Frame = 2
Query:  122 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 460
            +ETF FQAEI+QLLSLIINT YSNKEIFLRELISN+SDALDKIR++SL+D +KLD   +L I IIPDK N +L+I D+GIGMTKADL+NNLGTIARSGTK+FMEAL+AGAD+S
Sbjct:    3 SETFEFQAEISQLLSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPTKLDTGKDLRIDIIPDKENKTLTIRDTGIGMTKADLINNLGTIARSGTKQFMEALSAGADIS 115          
BLAST of FC868997 vs. ExPASy Swiss-Prot
Match: HS90B_CHICK (Heat shock cognate protein HSP 90-beta OS=Gallus gallus GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.632e-42
Identity = 89/121 (73.55%), Postives = 103/121 (85.12%), Query Frame = 2
Query:   98 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 460
            QV     E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD   +L I I+P+  + +L+++D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    4 QVQHGEDEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDTGKDLKIDIVPNPRDPTLTLLDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 124          
BLAST of FC868997 vs. ExPASy Swiss-Prot
Match: HSP90_CAEEL (Heat shock protein 90 OS=Caenorhabditis elegans GN=daf-21 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.784e-42
Identity = 86/117 (73.50%), Postives = 102/117 (87.18%), Query Frame = 2
Query:  110 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 460
            M+   ETFAFQAEI QL+SLIINTFYSNKEI+LRELISN+SDALDKIR+++LT+ S+LD   ELFI I P+K   +L+I+D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    1 MSENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGKELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 117          
BLAST of FC868997 vs. ExPASy Swiss-Prot
Match: HSP90_CAEBR (Heat shock protein 90 OS=Caenorhabditis briggsae GN=daf-21 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.784e-42
Identity = 86/117 (73.50%), Postives = 102/117 (87.18%), Query Frame = 2
Query:  110 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 460
            M+   ETFAFQAEI QL+SLIINTFYSNKEI+LRELISN+SDALDKIR+++LT+ S+LD   ELFI I P+K   +L+I+D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    1 MSENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGKELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 117          
BLAST of FC868997 vs. ExPASy Swiss-Prot
Match: HS90B_DANRE (Heat shock protein HSP 90-beta OS=Danio rerio GN=hsp90ab1 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 3.636e-42
Identity = 86/114 (75.44%), Postives = 101/114 (88.60%), Query Frame = 2
Query:  119 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 460
            E ETFAFQAEI QL+SLIINTFYSNKEIFLREL+SN+SDALDKIR+ESLTD +KLD+  +L I IIP+    +L++ID+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   10 EAETFAFQAEIAQLMSLIINTFYSNKEIFLRELVSNASDALDKIRYESLTDPTKLDSGKDLKIDIIPNVQERTLTLIDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 123          
BLAST of FC868997 vs. ExPASy Swiss-Prot
Match: HSP90_BRUPA (Heat shock protein 90 OS=Brugia pahangi GN=HSP90 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 2.357e-41
Identity = 84/112 (75.00%), Postives = 101/112 (90.18%), Query Frame = 2
Query:  125 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 460
            ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+++LT+ ++L+   EL+I I P+K + +L+I+D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    8 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYQALTEPAELETGKELYIKITPNKADKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 119          
BLAST of FC868997 vs. ExPASy Swiss-Prot
Match: HSP83_LEIAM (Heat shock protein 83 OS=Leishmania amazonensis GN=HSP83 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.357e-41
Identity = 84/113 (74.34%), Postives = 98/113 (86.73%), Query Frame = 2
Query:  122 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 460
            TETFAFQAEINQL+SLIINTFYSNKEIFLR++ISN+SDA DKIR++SLTD S L     L + ++PDK N +L++ D+GIGMTKADLVNNLGTIARSGTK FMEAL AGAD+S
Sbjct:    2 TETFAFQAEINQLMSLIINTFYSNKEIFLRDVISNASDACDKIRYQSLTDPSVLGDATRLCVRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGADMS 114          
BLAST of FC868997 vs. ExPASy Swiss-Prot
Match: HSP82_AJECA (Heat shock protein 82 OS=Ajellomyces capsulata GN=HSP82 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.357e-41
Identity = 86/113 (76.11%), Postives = 100/113 (88.50%), Query Frame = 2
Query:  122 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 460
            +ETF FQAEI+QLLSLIINT YSNKEIFLRELISN SDALDKIR+++L+D SKL++  +L I I PDK N +L+I D+GIGMTKADLVNNLGTIARSGTK+FMEAL AGAD+S
Sbjct:    3 SETFEFQAEISQLLSLIINTVYSNKEIFLRELISNFSDALDKIRYKALSDPSKLESDKDLRIDITPDKENKTLTIRDTGIGMTKADLVNNLGTIARSGTKQFMEALTAGADIS 115          
BLAST of FC868997 vs. ExPASy Swiss-Prot
Match: HSP90_SCHPO (Heat shock protein 90 homolog OS=Schizosaccharomyces pombe GN=swo1 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 3.078e-41
Identity = 84/115 (73.04%), Postives = 99/115 (86.09%), Query Frame = 2
Query:  116 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 460
            S TETF F+AEI+QL+SLIINT YSNKEIFLRELISN+SDALDKIR++SL+D   LDA+ +LFI I PDK N  LSI D+GIGMTK DL+NNLG IA+SGTK+FMEA A+GAD+S
Sbjct:    2 SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADIS 116          
The following BLAST results are available for this feature:
BLAST of FC868997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HS90B_MOUSE9.568e-4376.32Heat shock protein HSP 90-beta OS=Mus musculus GN=... [more]
HSP90_ASPFU1.632e-4276.99Heat shock protein 90 OS=Aspergillus fumigatus GN=... [more]
HS90B_CHICK1.632e-4273.55Heat shock cognate protein HSP 90-beta OS=Gallus g... [more]
HSP90_CAEEL2.784e-4273.50Heat shock protein 90 OS=Caenorhabditis elegans GN... [more]
HSP90_CAEBR2.784e-4273.50Heat shock protein 90 OS=Caenorhabditis briggsae G... [more]
HS90B_DANRE3.636e-4275.44Heat shock protein HSP 90-beta OS=Danio rerio GN=h... [more]
HSP90_BRUPA2.357e-4175.00Heat shock protein 90 OS=Brugia pahangi GN=HSP90 P... [more]
HSP83_LEIAM2.357e-4174.34Heat shock protein 83 OS=Leishmania amazonensis GN... [more]
HSP82_AJECA2.357e-4176.11Heat shock protein 82 OS=Ajellomyces capsulata GN=... [more]
HSP90_SCHPO3.078e-4173.04Heat shock protein 90 homolog OS=Schizosaccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionC31007D08EF AbioticL1 Citrus clementina cDNA clone C31007D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868997 ID=FC868997; Name=FC868997; organism=Citrus clementina; type=EST; length=460bp
GAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTGTCTCTCGTTCGCTTCCA
AAAACCCTTGTTTATAACTCAGAAGAGATCGTTTTTTGGTTGAACGGCAG
GTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGGCTGAGAT
CAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGA
TCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATC
AGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGCT
TTTCATTCACATTATCCCTGATAAGACCAACAACTCATTGTCTATTATTG
ACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTACA
ATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGC
GGATGTGAGC
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