FC868998

Overview
NameFC868998
Unique NameFC868998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_PSEAE (Chaperone protein htpG OS=Pseudomonas aeruginosa GN=htpG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.640e-26
Identity = 58/113 (51.33%), Postives = 86/113 (76.11%), Query Frame = 2
Query:  104 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            +S+ ++ ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RFE+L +   L+   EL I +  DK  N++++ D+GIGM++ D+V +LGTIA+SGT +F++ L+
Sbjct:    1 MSVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFEALANPELLEGGAELKIRVSFDKEANTVTLEDNGIGMSREDVVTHLGTIAKSGTADFLKNLS 113          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_PSEA7 (Chaperone protein htpG OS=Pseudomonas aeruginosa (strain PA7) GN=htpG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.640e-26
Identity = 58/113 (51.33%), Postives = 86/113 (76.11%), Query Frame = 2
Query:  104 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            +S+ ++ ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RFE+L +   L+   EL I +  DK  N++++ D+GIGM++ D+V +LGTIA+SGT +F++ L+
Sbjct:    1 MSVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFEALANPELLEGGAELKIRVSFDKEANTVTLEDNGIGMSREDVVTHLGTIAKSGTADFLKNLS 113          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_BURTA (Chaperone protein htpG OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=htpG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.640e-26
Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = 2
Query:  125 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            +T +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE+L + +  ++ P L I +  DK   +L+I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEALENNALYESDPNLRIRLSFDKAARTLTIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLS 109          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_BURS3 (Chaperone protein htpG OS=Burkholderia sp. (strain 383) GN=htpG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.640e-26
Identity = 59/106 (55.66%), Postives = 79/106 (74.53%), Query Frame = 2
Query:  125 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE L D +  +  P + I I  DK   +++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYEDDPNVRIRIGYDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLS 109          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_BORPA (Chaperone protein htpG OS=Bordetella parapertussis GN=htpG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.640e-26
Identity = 59/108 (54.63%), Postives = 79/108 (73.15%), Query Frame = 2
Query:  116 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 439
            S +ET  FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE++     LD   EL I +  DK   +++I D+GIG+++ + V NLGTIARSGT+EF   L
Sbjct:    8 SASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAIDQPGLLDGDGELAIRVDYDKAARTITISDNGIGLSRDEAVANLGTIARSGTREFFSQL 115          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_BORBR (Chaperone protein htpG OS=Bordetella bronchiseptica GN=htpG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.640e-26
Identity = 59/108 (54.63%), Postives = 79/108 (73.15%), Query Frame = 2
Query:  116 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 439
            S +ET  FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE++     LD   EL I +  DK   +++I D+GIG+++ + V NLGTIARSGT+EF   L
Sbjct:    8 SASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAIDQPGLLDGDGELAIRVDYDKAARTITISDNGIGLSRDEAVANLGTIARSGTREFFSQL 115          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_AERS4 (Chaperone protein htpG OS=Aeromonas salmonicida (strain A449) GN=htpG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.640e-26
Identity = 56/113 (49.56%), Postives = 84/113 (74.34%), Query Frame = 2
Query:  104 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            ++ +   ET  FQ E+ QLLSL+ ++ YSNKE+FLRELISN+SDA DK+RF++L+D S  +   +L + ++ DK N +L+I D+GIGMT+  ++ +LGTIA+SGT EF + L+
Sbjct:    1 MTQSVHAETHGFQTEVKQLLSLMAHSLYSNKEVFLRELISNASDAADKLRFKALSDASLFENDGQLRVRLVVDKENRTLTISDNGIGMTRDQVIEHLGTIAKSGTAEFFKNLS 113          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_AERHH (Chaperone protein htpG OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=htpG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.640e-26
Identity = 56/113 (49.56%), Postives = 84/113 (74.34%), Query Frame = 2
Query:  104 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            ++ +   ET  FQ E+ QLLSL+ ++ YSNKE+FLRELISN+SDA DK+RF++L+D S  +   +L + ++ DK N +L+I D+GIGMT+  ++ +LGTIA+SGT EF + L+
Sbjct:    1 MTQSVHAETHGFQTEVKQLLSLMAHSLYSNKEVFLRELISNASDAADKLRFKALSDASLFENDGQLRVRLVVDKENRTLTISDNGIGMTRDQVIEHLGTIAKSGTAEFFKNLS 113          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_WOLPM (Chaperone protein htpG OS=Wolbachia pipientis wMel GN=htpG PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.141e-26
Identity = 58/114 (50.88%), Postives = 83/114 (72.81%), Query Frame = 2
Query:  119 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 460
            ETE   F AE+ ++L+++I++ Y+NK+IFLRELISN+SDA DK+R+ES  + + LD   EL I I  +K  N L I D+GIGM + DL++NLGTIA SGT++F++A+    D S
Sbjct:   10 ETENLKFDAEVGKVLNIVIHSLYTNKDIFLRELISNASDACDKLRYESQLNPNLLDLSDELKITISSNKDKNELYITDNGIGMNRQDLIDNLGTIASSGTQKFLDAIKNSKDSS 123          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_RALSO (Chaperone protein htpG OS=Ralstonia solanacearum GN=htpG PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.141e-26
Identity = 60/111 (54.05%), Postives = 81/111 (72.97%), Query Frame = 2
Query:  110 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            M +  E  AFQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA+DK+RFE + D S L+   EL I I  D    +++I D+GIGM++ + + NLGTIARSGT+EF   L+
Sbjct:    1 MGAPHEKMAFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAVDKLRFEGIADPSLLEGGGELGIRIGFDAQARTVTIADNGIGMSRDEAIRNLGTIARSGTREFFSQLS 111          
The following BLAST results are available for this feature:
BLAST of FC868998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_PSEAE1.640e-2651.33Chaperone protein htpG OS=Pseudomonas aeruginosa G... [more]
HTPG_PSEA71.640e-2651.33Chaperone protein htpG OS=Pseudomonas aeruginosa (... [more]
HTPG_BURTA1.640e-2654.72Chaperone protein htpG OS=Burkholderia thailandens... [more]
HTPG_BURS31.640e-2655.66Chaperone protein htpG OS=Burkholderia sp. (strain... [more]
HTPG_BORPA1.640e-2654.63Chaperone protein htpG OS=Bordetella parapertussis... [more]
HTPG_BORBR1.640e-2654.63Chaperone protein htpG OS=Bordetella bronchiseptic... [more]
HTPG_AERS41.640e-2649.56Chaperone protein htpG OS=Aeromonas salmonicida (s... [more]
HTPG_AERHH1.640e-2649.56Chaperone protein htpG OS=Aeromonas hydrophila sub... [more]
HTPG_WOLPM2.141e-2650.88Chaperone protein htpG OS=Wolbachia pipientis wMel... [more]
HTPG_RALSO2.141e-2654.05Chaperone protein htpG OS=Ralstonia solanacearum G... [more]

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Properties
Property NameValue
Genbank descriptionC31007D09EF AbioticL1 Citrus clementina cDNA clone C31007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868998 ID=FC868998; Name=FC868998; organism=Citrus clementina; type=EST; length=460bp
GAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTGTCTCTCGTTCGCTTCCA
AAAACCCTTGTTTATAACTCAGAAGAGATCGTTTTTTGGTTGAACGGCAG
GTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGGCTGAGAT
CAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGA
TCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATC
AGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGCT
TTTCATTCACATTATCCCTGATAAGACCAACAACTCATTGTCTATTATTG
ACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTACA
ATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGC
GGATGTGAGC
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