FC868998

Overview
NameFC868998
Unique NameFC868998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_BURXL (Chaperone protein htpG OS=Burkholderia xenovorans (strain LB400) GN=htpG PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.771e-26
Identity = 58/106 (54.72%), Postives = 80/106 (75.47%), Query Frame = 2
Query:  125 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            ET +FQAE+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RFE++ + +  +  P L I +  DK   +++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFEAIENSALYENDPNLRIRVSYDKDARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFGKLS 109          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_PSEFS (Chaperone protein htpG OS=Pseudomonas fluorescens (strain SBW25) GN=htpG PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.231e-26
Identity = 57/113 (50.44%), Postives = 85/113 (75.22%), Query Frame = 2
Query:  104 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            +S+ ++ ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA+DK+RFE+L+    L+   EL I +  DK   ++++ D+GIGM++ D + +LGTIA+SGT +FM+ L+
Sbjct:    3 MSVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSKPELLEGGAELKIRVSFDKDAKTVTLEDNGIGMSREDAITHLGTIAKSGTADFMKNLS 115          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_BUCAP (Chaperone protein htpG OS=Buchnera aphidicola subsp. Schizaphis graminum GN=htpG PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.231e-26
Identity = 56/105 (53.33%), Postives = 82/105 (78.10%), Query Frame = 2
Query:  125 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 439
            E ++FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA+DK+RF+S+++    +   +  I I  +K+  +L I D+GIGMT+ D+V NLGTIA+SGTK F+++L
Sbjct:    7 EVYSFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFQSISNPELYENDSDFKIQISINKSQGTLIISDNGIGMTRQDVVENLGTIAKSGTKSFIKSL 111          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_BORPE (Chaperone protein htpG OS=Bordetella pertussis GN=htpG PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.231e-26
Identity = 58/108 (53.70%), Postives = 79/108 (73.15%), Query Frame = 2
Query:  116 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 439
            S +ET  FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE++     L+   EL I +  DK   +++I D+GIG+++ + V NLGTIARSGT+EF   L
Sbjct:    8 SASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAIDQPGLLEGDGELAIRVGYDKAARTITISDNGIGLSRDEAVANLGTIARSGTREFFSQL 115          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_ACTPJ (Chaperone protein htpG OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=htpG PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.231e-26
Identity = 56/110 (50.91%), Postives = 85/110 (77.27%), Query Frame = 2
Query:  110 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 439
            M++  ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF++L++ +  +   EL + +  D+T  +L+I D+GIGM +  ++++LGTIA+SGTKEF+ +L
Sbjct:    1 MSTNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAADKLRFKALSNPALYEGDGELRVRVSFDETLGTLTISDNGIGMNREQVIDHLGTIAKSGTKEFLNSL 110          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_ACTP7 (Chaperone protein htpG OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=htpG PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.231e-26
Identity = 56/110 (50.91%), Postives = 85/110 (77.27%), Query Frame = 2
Query:  110 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 439
            M++  ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF++L++ +  +   EL + +  D+T  +L+I D+GIGM +  ++++LGTIA+SGTKEF+ +L
Sbjct:    1 MSTNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAADKLRFKALSNPALYEGDGELRVRVSFDETLGTLTISDNGIGMNREQVIDHLGTIAKSGTKEFLNSL 110          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_ACTP2 (Chaperone protein htpG OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=htpG PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.231e-26
Identity = 56/110 (50.91%), Postives = 85/110 (77.27%), Query Frame = 2
Query:  110 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 439
            M++  ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF++L++ +  +   EL + +  D+T  +L+I D+GIGM +  ++++LGTIA+SGTKEF+ +L
Sbjct:    1 MSTNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAADKLRFKALSNPALYEGDGELRVRVSFDETLGTLTISDNGIGMNREQVIDHLGTIAKSGTKEFLNSL 110          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_YERPS (Chaperone protein htpG OS=Yersinia pseudotuberculosis GN=htpG PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.137e-26
Identity = 55/107 (51.40%), Postives = 82/107 (76.64%), Query Frame = 2
Query:  125 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 445
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   +L++ D+GIGMT+ ++++NLGTIA+SGTK F+E++ +
Sbjct:    7 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPELFEGDGELRVRLSFDKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGS 113          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_YERPP (Chaperone protein htpG OS=Yersinia pestis (strain Pestoides F) GN=htpG PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.137e-26
Identity = 55/107 (51.40%), Postives = 82/107 (76.64%), Query Frame = 2
Query:  125 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 445
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   +L++ D+GIGMT+ ++++NLGTIA+SGTK F+E++ +
Sbjct:    7 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPELFEGDGELRVRLSFDKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGS 113          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_YERPN (Chaperone protein htpG OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=htpG PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.137e-26
Identity = 55/107 (51.40%), Postives = 82/107 (76.64%), Query Frame = 2
Query:  125 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 445
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   +L++ D+GIGMT+ ++++NLGTIA+SGTK F+E++ +
Sbjct:    7 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPELFEGDGELRVRLSFDKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGS 113          
The following BLAST results are available for this feature:
BLAST of FC868998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_BURXL4.771e-2654.72Chaperone protein htpG OS=Burkholderia xenovorans ... [more]
HTPG_PSEFS6.231e-2650.44Chaperone protein htpG OS=Pseudomonas fluorescens ... [more]
HTPG_BUCAP6.231e-2653.33Chaperone protein htpG OS=Buchnera aphidicola subs... [more]
HTPG_BORPE6.231e-2653.70Chaperone protein htpG OS=Bordetella pertussis GN=... [more]
HTPG_ACTPJ6.231e-2650.91Chaperone protein htpG OS=Actinobacillus pleuropne... [more]
HTPG_ACTP76.231e-2650.91Chaperone protein htpG OS=Actinobacillus pleuropne... [more]
HTPG_ACTP26.231e-2650.91Chaperone protein htpG OS=Actinobacillus pleuropne... [more]
HTPG_YERPS8.137e-2651.40Chaperone protein htpG OS=Yersinia pseudotuberculo... [more]
HTPG_YERPP8.137e-2651.40Chaperone protein htpG OS=Yersinia pestis (strain ... [more]
HTPG_YERPN8.137e-2651.40Chaperone protein htpG OS=Yersinia pestis bv. Anti... [more]

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Properties
Property NameValue
Genbank descriptionC31007D09EF AbioticL1 Citrus clementina cDNA clone C31007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868998 ID=FC868998; Name=FC868998; organism=Citrus clementina; type=EST; length=460bp
GAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTGTCTCTCGTTCGCTTCCA
AAAACCCTTGTTTATAACTCAGAAGAGATCGTTTTTTGGTTGAACGGCAG
GTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGGCTGAGAT
CAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGA
TCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATC
AGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGCT
TTTCATTCACATTATCCCTGATAAGACCAACAACTCATTGTCTATTATTG
ACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTACA
ATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGC
GGATGTGAGC
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