FC868998

Overview
NameFC868998
Unique NameFC868998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_CUPTR (Chaperone protein htpG OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.304e-27
Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 2
Query:  110 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            M +  ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE++ + S L+   +L I I  D    +L I D+GIGM++ + + NLGTIARSGTKEF + L+
Sbjct:    1 MTAPHETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEADAKARTLKITDNGIGMSRDEAIRNLGTIARSGTKEFFQQLS 111          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_BAUCH (Chaperone protein htpG OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=htpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.304e-27
Identity = 57/107 (53.27%), Postives = 82/107 (76.64%), Query Frame = 2
Query:  119 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 439
            E ET  FQ+E+ QLL+L+I++ YSNKEIFLRELISN+SDA DK+RF +L      +   EL++ II +K   +++IID+GIGM + ++++NLGTIA+SGTK F+E +
Sbjct:    5 EQETLGFQSEVKQLLNLMIHSLYSNKEIFLRELISNASDAADKLRFLALAKPDLYEGNGELYVRIICNKEKRTITIIDNGIGMCRTEVIDNLGTIAKSGTKAFLETI 111          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_NITEC (Chaperone protein htpG OS=Nitrosomonas eutropha (strain C91) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.315e-27
Identity = 58/109 (53.21%), Postives = 84/109 (77.06%), Query Frame = 2
Query:  113 ASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 439
            A   E   FQAE  QLL L+I++ YSNKEIFLRELISN+SDA DK+RFE L+D +  ++ P+L I I  DK   +++I D+GIGM++ ++++N+GTIA+SGT+EF+++L
Sbjct:    4 AENVEHLNFQAEAKQLLRLMIHSLYSNKEIFLRELISNASDAADKLRFEGLSDTALYESDPDLKIRIAYDKEARTITISDNGIGMSRQEVIDNIGTIAKSGTREFIDSL 112          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_CHRVO (Chaperone protein htpG OS=Chromobacterium violaceum GN=htpG PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 4.315e-27
Identity = 59/111 (53.15%), Postives = 82/111 (73.87%), Query Frame = 2
Query:  110 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            M+++ ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RFE L      +  PEL I I  DK   +++I D+GIGM++ ++V+++GTIA+SGTK F E L+
Sbjct:    1 MSAQKETLGFQTEVKQLLKLMIHSLYSNKEIFLRELISNASDAADKLRFEGLAKPELFENDPELKIRIAFDKDARTITIADNGIGMSRDEVVSHIGTIAKSGTKSFFEQLS 111          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_ACIF5 (Chaperone protein htpG OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.315e-27
Identity = 59/111 (53.15%), Postives = 82/111 (73.87%), Query Frame = 2
Query:  110 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            MA+  ET  FQ EINQLL L+I++ YSNKEIFLRELISN+SDA DK+RFE+L D + L    EL + +  D    ++++ D+GIGM + +++ N+GTIA+SGT+EF E L+
Sbjct:    1 MAASKETMQFQTEINQLLQLMIHSLYSNKEIFLRELISNASDACDKLRFEALADPALLTGDSELKVEVDFDPEAGTITVRDNGIGMNRDEVIANIGTIAKSGTREFFERLS 111          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_ACIF2 (Chaperone protein htpG OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.315e-27
Identity = 59/111 (53.15%), Postives = 82/111 (73.87%), Query Frame = 2
Query:  110 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            MA+  ET  FQ EINQLL L+I++ YSNKEIFLRELISN+SDA DK+RFE+L D + L    EL + +  D    ++++ D+GIGM + +++ N+GTIA+SGT+EF E L+
Sbjct:    1 MAASKETMQFQTEINQLLQLMIHSLYSNKEIFLRELISNASDACDKLRFEALADPALLTGDSELKVEVDFDPEAGTITVRDNGIGMNRDEVIANIGTIAKSGTREFFERLS 111          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_RALME (Chaperone protein htpG OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.635e-27
Identity = 59/111 (53.15%), Postives = 82/111 (73.87%), Query Frame = 2
Query:  110 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            M +  ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE++ + + L+   +L I I  D    +L I D+GIGM++ + + NLGTIARSGTKEF + L+
Sbjct:    1 MTAPHETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPALLENDADLAIRIEADPAARTLKITDNGIGMSRDEAIRNLGTIARSGTKEFFQQLS 111          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_COXBN (Chaperone protein htpG OS=Coxiella burnetii (strain Dugway 5J108-111) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.635e-27
Identity = 58/113 (51.33%), Postives = 87/113 (76.99%), Query Frame = 2
Query:  104 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            +S+  ++ET +F+AE+ QLL L+ ++ YSNKEIFLRELISNSSDA DK+R+++L+D +  +   +L I I  DK N +++I D+GIGM++ +++ NLGTIA+SGT+ F E LA
Sbjct:    1 MSLQPQSETLSFEAEVKQLLHLVAHSLYSNKEIFLRELISNSSDAADKLRYQALSDAALYENDADLKIWIDFDKDNRTITIRDNGIGMSREEVIENLGTIAKSGTRAFRELLA 113          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_TREDE (Chaperone protein htpG OS=Treponema denticola GN=htpG PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.360e-27
Identity = 60/105 (57.14%), Postives = 83/105 (79.05%), Query Frame = 2
Query:  131 FAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 445
            + F+ E+NQLLSLII++ YSNKEIFLREL+SN+SDALDK+++ +L+D++    + E  I I  D T N+L++ D+G+GM + DL NNLGTIARSGTK F++ LAA
Sbjct:    4 YKFETEVNQLLSLIIHSLYSNKEIFLRELVSNASDALDKLKYLTLSDEAYKQIKFEPRIDICFDDTANTLTVRDTGLGMNEEDLKNNLGTIARSGTKAFLDQLAA 108          
BLAST of FC868998 vs. ExPASy Swiss-Prot
Match: HTPG_COXBU (Chaperone protein htpG OS=Coxiella burnetii GN=htpG PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.360e-27
Identity = 58/113 (51.33%), Postives = 86/113 (76.11%), Query Frame = 2
Query:  104 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 442
            +S+  + ET +F+AE+ QLL L+ ++ YSNKEIFLRELISNSSDA DK+R+++L+D +  +   +L I I  DK N +++I D+GIGM++ +++ NLGTIA+SGT+ F E LA
Sbjct:    1 MSLQPQAETLSFEAEVKQLLHLVAHSLYSNKEIFLRELISNSSDAADKLRYQALSDAALYENDADLKIWIDFDKDNRTITIRDNGIGMSREEVIENLGTIAKSGTRAFRELLA 113          
The following BLAST results are available for this feature:
BLAST of FC868998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_CUPTR3.304e-2754.05Chaperone protein htpG OS=Cupriavidus taiwanensis ... [more]
HTPG_BAUCH3.304e-2753.27Chaperone protein htpG OS=Baumannia cicadellinicol... [more]
HTPG_NITEC4.315e-2753.21Chaperone protein htpG OS=Nitrosomonas eutropha (s... [more]
HTPG_CHRVO4.315e-2753.15Chaperone protein htpG OS=Chromobacterium violaceu... [more]
HTPG_ACIF54.315e-2753.15Chaperone protein htpG OS=Acidithiobacillus ferroo... [more]
HTPG_ACIF24.315e-2753.15Chaperone protein htpG OS=Acidithiobacillus ferroo... [more]
HTPG_RALME5.635e-2753.15Chaperone protein htpG OS=Ralstonia metallidurans ... [more]
HTPG_COXBN5.635e-2751.33Chaperone protein htpG OS=Coxiella burnetii (strai... [more]
HTPG_TREDE7.360e-2757.14Chaperone protein htpG OS=Treponema denticola GN=h... [more]
HTPG_COXBU7.360e-2751.33Chaperone protein htpG OS=Coxiella burnetii GN=htp... [more]

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Properties
Property NameValue
Genbank descriptionC31007D09EF AbioticL1 Citrus clementina cDNA clone C31007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868998 ID=FC868998; Name=FC868998; organism=Citrus clementina; type=EST; length=460bp
GAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTGTCTCTCGTTCGCTTCCA
AAAACCCTTGTTTATAACTCAGAAGAGATCGTTTTTTGGTTGAACGGCAG
GTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGGCTGAGAT
CAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGA
TCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATC
AGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGCT
TTTCATTCACATTATCCCTGATAAGACCAACAACTCATTGTCTATTATTG
ACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTACA
ATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGC
GGATGTGAGC
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