FC868999

Overview
NameFC868999
Unique NameFC868999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9440 contig Ccv1_Contig9440:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868999 vs. ExPASy Swiss-Prot
Match: BGLH_BACSU (Aryl-phospho-beta-D-glucosidase bglH OS=Bacillus subtilis GN=bglH PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 58/163 (35.58%), Postives = 92/163 (56.44%), Query Frame = 3
Query:  237 STRNSFPPEFLFGTASSAYQYEGAAHVGGRKPSVWDTFAMDQPEKILDHSNGDVAD--------NFYFRYKEDIALVKQVGFDSLRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISYGLKPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCF 701
            S    FP  FL+G A +A Q EGA + GG+  S  D      P  I+   +  +          +FY RYKEDIAL  ++GF + R SI+W+RI P+G+     N++G+ FY++L +EL+ + ++P VT+ H++ P  L   YGG+ + K+++ +  YA   F
Sbjct:    3 SNEKRFPEGFLWGGAVAANQVEGAYNEGGKGLSTADV----SPNGIMSPFDESMTSLNLYHNGIDFYHRYKEDIALFAEMGFKAFRTSIAWTRIFPNGD-EEEPNEEGLRFYDDLFDELLKHHIEPVVTISHYEMPLGLVKNYGGWKNRKVIEFYERYAKTVF 160          
BLAST of FC868999 vs. ExPASy Swiss-Prot
Match: BGLA_ENTAG (Beta-glucosidase A OS=Enterobacter agglomerans GN=bglA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 60/158 (37.97%), Postives = 86/158 (54.43%), Query Frame = 3
Query:  234 GSTRNSFPPEFLFGTASSAYQYEGAAHVGGRKPSVWDTFAMDQPEKILDHSNGDVADNFYFR--YKEDIALVKQVGFDSLRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISYGLKPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCF 701
            G T    P  FL+G AS+AYQ EGA +  G+  SVWD + +D+        +G +   F  R  Y +DI L K++G +S RFS       P G   G VN + V  Y   I +L + G+KP VTL+HWD P++L    GG+ + + V+ F  YA++ F
Sbjct:    9 GMTAADVPDNFLWGAASAAYQVEGATNKDGKGRSVWDYY-LDEKHLAGPGISGALRLTFTDRDQYLKDIQLFKELGLNSYRFSHRLDTYYPDGQ--GPVNLRAVAHYRQFITDLEAAGIKPLVTLYHWDMPESL-SAAGGWENRESVEWFQRYAEVIF 162          
The following BLAST results are available for this feature:
BLAST of FC868999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
BGLH_BACSU2.369e-2135.58Aryl-phospho-beta-D-glucosidase bglH OS=Bacillus s... [more]
BGLA_ENTAG8.427e-1937.97Beta-glucosidase A OS=Enterobacter agglomerans GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31007D10EF AbioticL1 Citrus clementina cDNA clone C31007D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868999 ID=FC868999; Name=FC868999; organism=Citrus clementina; type=EST; length=701bp
GGAAATTGAATAAAATAATAGCTCACTGTACGTACTGCTTAATTAATATA
TGTATTTGGGGGCGGGTTAGGTTATGCATCATATACTACTATTAGTTCAT
AATGATGAAGCTTCCATATATAATTCATCGGAAGGGAGAGGTAGGGAGAG
TGGAAGTTAAATTTCAGAATCTTTTTGTCTGTTATCTGATCACATCTTCG
ATTTGCTTATCATCTGTATGCCTCCCCTGCTACGGCTCCACTCGGAATAG
CTTTCCGCCTGAGTTTTTATTTGGAACAGCATCAAGTGCTTACCAGTATG
AAGGAGCAGCTCACGTTGGAGGGAGGAAACCAAGCGTATGGGATACCTTC
GCCATGGATCAACCAGAGAAAATTTTGGACCACAGTAATGGGGATGTAGC
TGACAACTTTTACTTTCGTTACAAGGAGGACATTGCTTTGGTGAAGCAAG
TTGGTTTCGACTCCCTAAGATTCTCAATATCATGGTCCAGAATTTTACCT
CATGGAAATATTAGTGGGGGAGTGAACCAACAAGGTGTCGATTTCTACAA
TAATCTCATCAACGAGCTCATTTCATACGGCTTAAAGCCCTTTGTGACTT
TATTCCACTGGGACACTCCACAAGCTCTAGAAGATGAATATGGTGGATTC
TTAAGTCCTAAAATTGTAAAAGATTTTGGTGACTATGCGGACTTGTGCTT
C
back to top