FC869000

Overview
NameFC869000
Unique NameFC869000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: LOVHK_PSESM (Blue-light-activated protein OS=Pseudomonas syringae pv. tomato GN=PSPTO_2896 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  412 VVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGD 699
            +VTD   PD+PII+ N  F  +TGY AE++LG NCRFLQ          P  D +VV  IR  + +  +   E++N+RKDGS   N L +SP+Y D
Sbjct:   36 IVTDPNRPDNPIIFSNRAFLEMTGYTAEEILGTNCRFLQ---------GPDTDPAVVQSIRDAIAQRNDISAEIINYRKDGSSFWNALFISPVYND 122          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: PHOT1_ARATH (Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.561e-15
Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  409 FVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDEXIL 714
            FVV+DA +PD+PI+Y ++ F ++TGY +++V+GRNCRFLQ  G          D+  +++IR  L  G  + G +LN++KDG+   N L ++PI  +   +L
Sbjct:  199 FVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSG---------TDADELAKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPIKDESGKVL 291          

HSP 2 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 35/94 (37.23%), Postives = 50/94 (53.19%), Query Frame = 1
Query:  409 FVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPI 690
            FV+TD   PD+PII+ +  F  +T Y  E++LGRNCRFLQ          P  D + V +IR  ++   E   +L+N+ K G    N   L P+
Sbjct:  477 FVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQ---------GPETDLTTVKKIRNAIDNQTEVTVQLINYTKSGKKFWNIFHLQPM 561          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: BAT_HALSA (Putative bacterio-opsin activator OS=Halobacterium salinarium GN=bat PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  388 LQSAPCGFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDD 702
            L  AP G  ++DA +P+ PIIY+N  FE ITGY  ++V+G N RFLQ          P  +   V+E    + E  + Q  L N+R+DGS   N++ +SPIY +D
Sbjct:  164 LDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRFLQ---------GPKTNEDRVAEFWTAITEDHDTQVVLRNYRRDGSLFWNQVDISPIYDED 259          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: PHOT_LISMO (Blue-light photoreceptor OS=Listeria monocytogenes GN=lmo0799 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  388 LQSAPCGFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDEXI 711
            L  +  G ++TD  + D+PII+VN+ FE+ITGY  E+ LG NC FLQ             D   V++IR  + E       L N+RKDG+  MN L + PIY D E +
Sbjct:   14 LNLSSVGVIITDPEQKDNPIIFVNTGFENITGYAKEEALGSNCHFLQGDD---------TDKEEVAKIRHAINEKSTANVLLKNYRKDGTSFMNELTIEPIYDDHEHL 112          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: LOVHK_OCHA4 (Blue-light-activated histidine kinase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=Oant_3652 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  343 AAFGGGPLPFPVGNLLQSAPCGFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPI 690
            A+F     PF     ++  P   ++T+   PD+PII+ N  F+++TGY A++++G+NCRFLQ  GP    +H       V  I   LE     + ++LN++K G P  NRL +SP+
Sbjct:   14 ASFSQEANPFTAA--VELTPMPMLITNPRLPDNPIIFANEAFQNLTGYEADEIIGKNCRFLQ--GPGTDPKH-------VEIIHSALEAEQSVEIDILNYKKSGEPFWNRLHISPV 118          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: LVHK1_ERYLH (Blue-light-activated histidine kinase 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=ELI_02980 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  391 QSAPCGFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQG----ELLNFRKDGSPLMNRLRLSPIYGDD 702
            Q       ++D  +PD P++YVN  F  +TGY  E+++GRNCRFLQ              +    E  R L EGI  +     +LLN+RKDG P  N + + PIYG+D
Sbjct:   44 QQTRLAICISDPHQPDCPVVYVNQAFLDLTGYAREEIVGRNCRFLQ-------------GADTDPEQVRKLREGIAAERYTVVDLLNYRKDGIPFWNAVHVGPIYGED 138          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: PHOT_LISIN (Blue-light photoreceptor OS=Listeria innocua GN=lin0792 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  388 LQSAPCGFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDEXI 711
            L  +  G ++TD  + ++PII+VN+ FE+ITGY  E+ +G NC FLQ             D   V++IR  + E       L N+RK+G+  MN L + PIY D++ +
Sbjct:   14 LNLSSVGVIITDPEQKNNPIIFVNTGFENITGYTKEEAIGSNCHFLQGDD---------TDKEEVAKIRHAINEKSTANVLLKNYRKNGTSFMNELTIEPIYDDNDHL 112          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: PHOT_BACSU (Blue-light photoreceptor OS=Bacillus subtilis GN=pfyP PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  406 GFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDEXILMSL 723
            G V+TD    D+PI+YVN  F  +TGY  E++LG+NCRFLQ +           D + V  IR  L+       ++ N++KDG+   N L + P+  +D+   + +
Sbjct:   26 GVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKH---------TDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIEDKTYFVGI 122          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: TLOV1_ARATH (Protein TWIN LOV 1 OS=Arabidopsis thaliana GN=TLP1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 1
Query:  388 LQSAPCGFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDE 705
            L+  P  F +TD     HPI++ +  F  +TGY  E+V+GRN +  Q  GP   RR        + EIR  + E    Q  LLN+RK GSP      + P++G D+
Sbjct:   32 LEELPHNFTITDPFISGHPIVFASLGFLKMTGYSREEVIGRNGKVFQ--GPKTNRRS-------IMEIREAIREERSVQVSLLNYRKSGSPFWMLFHMCPVFGKDD 128          

HSP 2 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  364 LPFPVGNLLQSAPCGFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNF--RKDGSPLMNRLRLSPI 690
            L   +G + QS    FV+T+   PD PIIY +  F ++TGY  ++VLG+NCRFL              DSSV+ E++ C+ +G     ++LN+  RKD S   N L +SP+
Sbjct:  250 LVISLGRIKQS----FVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVD---------TDSSVLYEMKECILKGQSCTVQILNYSNRKDKSSFWNLLHISPV 347          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUSU (Blue-light-activated histidine kinase OS=Brucella suis GN=BRA0588 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  412 VVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIY 693
            ++T+   PD+PI++ N  F  +TGY A++V+GRNCRFLQ  G          D + V  I+  +        +++N++K G    NRL +SP++
Sbjct:   35 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHG---------TDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVH 119          
The following BLAST results are available for this feature:
BLAST of FC869000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
LOVHK_PSESM9.190e-1643.75Blue-light-activated protein OS=Pseudomonas syring... [more]
PHOT1_ARATH4.561e-1539.22Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=... [more]
BAT_HALSA1.016e-1440.00Putative bacterio-opsin activator OS=Halobacterium... [more]
PHOT_LISMO2.264e-1439.81Blue-light photoreceptor OS=Listeria monocytogenes... [more]
LOVHK_OCHA45.043e-1435.34Blue-light-activated histidine kinase OS=Ochrobact... [more]
LVHK1_ERYLH3.269e-1337.96Blue-light-activated histidine kinase 1 OS=Erythro... [more]
PHOT_LISIN7.282e-1336.11Blue-light photoreceptor OS=Listeria innocua GN=li... [more]
PHOT_BACSU8.051e-1233.96Blue-light photoreceptor OS=Bacillus subtilis GN=p... [more]
TLOV1_ARATH1.373e-1135.85Protein TWIN LOV 1 OS=Arabidopsis thaliana GN=TLP1... [more]
LOVHK_BRUSU6.816e-1134.04Blue-light-activated histidine kinase OS=Brucella ... [more]

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Properties
Property NameValue
Genbank descriptionC31007D11EF AbioticL1 Citrus clementina cDNA clone C31007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869000 ID=FC869000; Name=FC869000; organism=Citrus clementina; type=EST; length=724bp
GGACCAAAAATTCTCTCTCTTTCCGGGAAAAAAAGAAAAAAGAAAAAGGA
AAAAAGAACTCAAATACTGTCTCTGCGCAAGTCCTTACTCCTTAGCTAAA
CTCTCCCGAACATTACTCACCCCACGTTTCTTTGCTCACCCCTTTTCTTT
TTTTTGCTTACCAGTTTTCCTATTTAACCCCTAGGTATAGGGTTTGCTAT
TTCCCCATTTCTCAAATGGGTTGAATTTTTTTTTTTTTAATTTCTTCTTG
TAATTTTGGGTTAATTCATGGAGTGGGATAGTAATTCTGATTTTAGCGAA
GACGAGGATGAGGAATTGACGACGATTAACGACGACGACGATGCTGCTTT
TGGTGGTGGCCCGCTACCTTTCCCTGTCGGGAACTTGCTCCAATCGGCGC
CCTGTGGGTTCGTTGTTACCGATGCTCTTGAACCCGACCATCCCATTATT
TATGTCAATTCTGTCTTTGAGTCCATCACTGGGTATCATGCTGAAGATGT
TCTGGGTCGTAATTGCCGTTTCCTGCAATGTAGAGGGCCATTTGCAAAGA
GAAGACATCCATTGGTGGATTCCTCAGTAGTTTCAGAAATTAGGAGATGT
CTTGAGGAGGGTATTGAATTCCAAGGCGAGTTGTTGAACTTCCGGAAAGA
TGGATCCCCTCTGATGAATAGATTGCGACTGTCTCCTATATATGGAGATG
ACGAAANCATACTCATGTCATTGG
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