FC869000

Overview
NameFC869000
Unique NameFC869000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUSI (Blue-light-activated histidine kinase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=BSUIS_B0585 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  412 VVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIY 693
            ++T+   PD+PI++ N  F  +TGY A++V+GRNCRFLQ  G          D + V  I+  +        +++N++K G    NRL +SP++
Sbjct:   35 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHG---------TDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVH 119          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUO2 (Blue-light-activated histidine kinase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=BOV_A0554 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  412 VVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIY 693
            ++T+   PD+PI++ N  F  +TGY A++V+GRNCRFLQ  G          D + V  I+  +        +++N++K G    NRL +SP++
Sbjct:   35 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHG---------TDPAHVCAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVH 119          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUME (Blue-light-activated histidine kinase OS=Brucella melitensis GN=BMEII0679 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  412 VVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIY 693
            ++T+   PD+PI++ N  F  +TGY A++V+GRNCRFLQ  G          D + V  I+  +        +++N++K G    NRL +SP++
Sbjct:   35 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHG---------TDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVH 119          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUC2 (Blue-light-activated histidine kinase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=BCAN_B0589 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  412 VVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIY 693
            ++T+   PD+PI++ N  F  +TGY A++V+GRNCRFLQ  G          D + V  I+  +        +++N++K G    NRL +SP++
Sbjct:   35 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHG---------TDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVH 119          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUAB (Blue-light-activated histidine kinase OS=Brucella abortus GN=BruAb2_0636 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  412 VVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIY 693
            ++T+   PD+PI++ N  F  +TGY A++V+GRNCRFLQ  G          D + V  I+  +        +++N++K G    NRL +SP++
Sbjct:   35 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHG---------TDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVH 119          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUA2 (Blue-light-activated histidine kinase OS=Brucella abortus (strain 2308) GN=BAB2_0652 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  412 VVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIY 693
            ++T+   PD+PI++ N  F  +TGY A++V+GRNCRFLQ  G          D + V  I+  +        +++N++K G    NRL +SP++
Sbjct:   35 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHG---------TDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVH 119          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUA1 (Blue-light-activated histidine kinase OS=Brucella abortus (strain S19) GN=BAbS19_II06090 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  412 VVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIY 693
            ++T+   PD+PI++ N  F  +TGY A++V+GRNCRFLQ  G          D + V  I+  +        +++N++K G    NRL +SP++
Sbjct:   35 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHG---------TDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVH 119          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: LVHK2_ERYLH (Blue-light-activated histidine kinase 2 OS=Erythrobacter litoralis (strain HTCC2594) GN=ELI_04860 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 36/102 (35.29%), Postives = 49/102 (48.04%), Query Frame = 1
Query:  400 PCGFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDE 705
            P    + D  + D P+IYVN  FE +TGY    V+GRNCRFLQ      ++  P     +   IR C     E +  + N+R DG    N L + P+   DE
Sbjct:   17 PFSLTIADISQDDEPLIYVNRAFEQMTGYSRSSVVGRNCRFLQ-----GEKTDPGAVERLAKAIRNC----EEVEETIYNYRADGEGFWNHLLMGPLEDQDE 109          
The following BLAST results are available for this feature:
BLAST of FC869000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
LOVHK_BRUSI6.816e-1134.04Blue-light-activated histidine kinase OS=Brucella ... [more]
LOVHK_BRUO26.816e-1134.04Blue-light-activated histidine kinase OS=Brucella ... [more]
LOVHK_BRUME6.816e-1134.04Blue-light-activated histidine kinase OS=Brucella ... [more]
LOVHK_BRUC26.816e-1134.04Blue-light-activated histidine kinase OS=Brucella ... [more]
LOVHK_BRUAB6.816e-1134.04Blue-light-activated histidine kinase OS=Brucella ... [more]
LOVHK_BRUA26.816e-1134.04Blue-light-activated histidine kinase OS=Brucella ... [more]
LOVHK_BRUA16.816e-1134.04Blue-light-activated histidine kinase OS=Brucella ... [more]
LVHK2_ERYLH8.902e-1135.29Blue-light-activated histidine kinase 2 OS=Erythro... [more]

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Properties
Property NameValue
Genbank descriptionC31007D11EF AbioticL1 Citrus clementina cDNA clone C31007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869000 ID=FC869000; Name=FC869000; organism=Citrus clementina; type=EST; length=724bp
GGACCAAAAATTCTCTCTCTTTCCGGGAAAAAAAGAAAAAAGAAAAAGGA
AAAAAGAACTCAAATACTGTCTCTGCGCAAGTCCTTACTCCTTAGCTAAA
CTCTCCCGAACATTACTCACCCCACGTTTCTTTGCTCACCCCTTTTCTTT
TTTTTGCTTACCAGTTTTCCTATTTAACCCCTAGGTATAGGGTTTGCTAT
TTCCCCATTTCTCAAATGGGTTGAATTTTTTTTTTTTTAATTTCTTCTTG
TAATTTTGGGTTAATTCATGGAGTGGGATAGTAATTCTGATTTTAGCGAA
GACGAGGATGAGGAATTGACGACGATTAACGACGACGACGATGCTGCTTT
TGGTGGTGGCCCGCTACCTTTCCCTGTCGGGAACTTGCTCCAATCGGCGC
CCTGTGGGTTCGTTGTTACCGATGCTCTTGAACCCGACCATCCCATTATT
TATGTCAATTCTGTCTTTGAGTCCATCACTGGGTATCATGCTGAAGATGT
TCTGGGTCGTAATTGCCGTTTCCTGCAATGTAGAGGGCCATTTGCAAAGA
GAAGACATCCATTGGTGGATTCCTCAGTAGTTTCAGAAATTAGGAGATGT
CTTGAGGAGGGTATTGAATTCCAAGGCGAGTTGTTGAACTTCCGGAAAGA
TGGATCCCCTCTGATGAATAGATTGCGACTGTCTCCTATATATGGAGATG
ACGAAANCATACTCATGTCATTGG
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