FC869007

Overview
NameFC869007
Unique NameFC869007
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.194e-26
Identity = 82/175 (46.86%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  190 TELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTK-----ESGGIDVIQKTKGKSASATGATDLSKPPA-KAQVVGWPPVRSFRKNIMAVQ----KDNEEGDNK-----AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFT 669
            TELRLGLP                           KRGF +T+ DLKL L T       +G  +     K K  +   A D  KPPA KAQ VGWPPVRSFR+NIM VQ    K  EE D +     A      + AFVKVSMDGAPYLRKVDLK+Y SY++LS AL KMF +FT
Sbjct:   10 TELRLGLPGGGGGAAEAAAKAA-------------KRGFEETI-DLKLKLPTAGMEEAAAGKAEAPAAEKAKRPAEAAAADAEKPPAPKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFT 170          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.194e-26
Identity = 82/175 (46.86%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  190 TELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTK-----ESGGIDVIQKTKGKSASATGATDLSKPPA-KAQVVGWPPVRSFRKNIMAVQ----KDNEEGDNK-----AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFT 669
            TELRLGLP                           KRGF +T+ DLKL L T       +G  +     K K  +   A D  KPPA KAQ VGWPPVRSFR+NIM VQ    K  EE D +     A      + AFVKVSMDGAPYLRKVDLK+Y SY++LS AL KMF +FT
Sbjct:   10 TELRLGLPGGGGGAAEAAAKAA-------------KRGFEETI-DLKLKLPTAGMEEAAAGKAEAPAAEKAKRPAEAAAADAEKPPAPKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFT 170          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24
Identity = 76/195 (38.97%), Postives = 94/195 (48.21%), Query Frame = 1
Query:  175 INFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGID-----------------------VIQKTKGKSASATGATDLSKPPA-KAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGS 687
            + F+ TELRLGLP                           KRGFA+T+ DLKL L       +                         ++++  +S+  T   D  KP A KAQVVGWPPVRSFRKN++A +                  A VKVSMDGAPYLRK+D+ +YKSY ELS A   MF+SFTIG CGS
Sbjct:    4 LGFDETELRLGLPGAGELAARSSG----------------KRGFAETI-DLKLKLQPAAPAAVSGEEGAQEDKEDADAAAAAADEKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRSFRKNVLAEK--------------CKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGS 167          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.852e-22
Identity = 73/188 (38.83%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  178 NFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSK------------PPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCG-SQGMKD 702
            + + TELRLGLP                           KRGF+D    L  + +   + G       KGK A+A    + ++            P AKAQVVGWPP+RS+RKN MA  +     ++ A         +VKVSMDGAPYLRKVDLK YK+Y++LS AL KMF  FT G  G S+  KD
Sbjct:   27 DLKGTELRLGLPGSHSPDRSPPAATLDLLPAAKGA----KRGFSDEARPLPASAAAAAAAG-------KGKKAAAGEEDEDAEEEDKKVAAAPQAPAAKAQVVGWPPIRSYRKNTMATNQLKSSKED-AEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTGKDGLSESRKD 202          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.494e-21
Identity = 55/111 (49.55%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  352 SGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCG 684
            SG +      + K+A A      + P AKAQVVGWPPVR++RKN +A      +G++K          +VKVSMDGAPYLRKVDLK+Y SY++LS AL KMFS F  G  G
Sbjct:   92 SGSVAAAAACQDKAAPAA-----APPAAKAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGP--LYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSG 195          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.669e-20
Identity = 64/154 (41.56%), Postives = 83/154 (53.90%), Query Frame = 1
Query:  295 KRGFADTVVDLK-----LNLSTKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQ--GMKDFMNESKLIDLL 735
            KRGF D++   +           E G  +  ++ KG   +A GA       AKAQVVGWPPVRS+RKN +A      +G+++          +VKVSMDGAPYLRKVDLK Y SY++LS AL KMFS F  G   S     +D + +    D L
Sbjct:   77 KRGFVDSLDRSEGRRAAATAGDDERGVREEEEEEKGLGEAAAGAPRA----AKAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEV--GCCYVKVSMDGAPYLRKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADAL 224          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.180e-20
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = 1
Query:  427 PPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCG 684
            P AKAQVVGWPPVR++RKN +A      +G++K          +VKVSMDGAPYLRKVDLK+Y SY++LS AL KMFS F  G  G
Sbjct:  113 PAAKAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGP--LYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSG 196          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 65/175 (37.14%), Postives = 87/175 (49.71%), Query Frame = 1
Query:  151 KFESFIKMINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 675
            K + + +++N +ATELRLGLP                             G  +TV   K N          V+ +   K   +TG T+ + PP KAQ+VGWPPVRS+RKN +  +K   EG             +VKVSMDGAPYLRK+DL +YK Y EL  +L  MF  F++G
Sbjct:    3 KVDVYDELVNLKATELRLGLP-----------------------------GTEETVSCGKSNKR--------VLPEATEKEIESTGKTETASPP-KAQIVGWPPVRSYRKNNVQTKKSESEGQGN----------YVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMF-KFSVG 128          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 51/96 (53.12%), Postives = 66/96 (68.75%), Query Frame = 1
Query:  424 KPPAKAQVVGWPPVRSFRKNIMA---VQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKD 702
            +P AKAQVVGWPP+RS+RKN MA   ++ + E+ D K          +VKVSMDGAPYLRKVDLK YK+Y+++S  L KMF  F+ G  G++  KD
Sbjct:  117 QPAAKAQVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQ----GFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFSTGKEGAENQKD 208          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 59/169 (34.91%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  169 KMINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 675
            + +N + TELRLGLP                                D V + K  +S   +    V+     K   ++     + PP KAQ+VGWPPVRS+RKN +  +K+  E + +          +VKVSMDGAPYLRK+DL  YK Y EL  AL  MF  F++G
Sbjct:    3 EFVNLKETELRLGLPG------------------------------TDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQIVGWPPVRSYRKNNIQSKKNESEHEGQGI--------YVKVSMDGAPYLRKIDLSCYKGYSELLKALEVMF-KFSVG 132          
The following BLAST results are available for this feature:
BLAST of FC869007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
IAA13_ORYSJ1.194e-2646.86Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI1.194e-2646.86Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA11_ORYSJ9.458e-2438.97Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
IAA17_ORYSJ8.852e-2238.83Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA5_ORYSJ7.494e-2149.55Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA19_ORYSJ1.669e-2041.56Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]
IAA5_ORYSI2.180e-2058.14Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA4_ARATH4.857e-2037.14Auxin-responsive protein IAA4 OS=Arabidopsis thali... [more]
IAA3_ORYSJ4.857e-2053.13Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA3_ARATH2.041e-1834.91Auxin-responsive protein IAA3 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC31007E06EF AbioticL1 Citrus clementina cDNA clone C31007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869007 ID=FC869007; Name=FC869007; organism=Citrus clementina; type=EST; length=737bp
GGCTCTTTCTTTGAATGCAATCAGAAAAAAAAAAACCAAAAGTACTACTC
TCGATGCCCTCTCAAAACACAAACAAACCAACCAAAAAAAAAAAACAAGA
GAGTGATAATTAATTAATTAAGAGAGGAGTTTAAGGAGTGTTTAGTGTGT
AAATTTGAAAGTTTCATTAAGATGATTAACTTCGAAGCGACGGAGCTTCG
GCTAGGGTTACCGGGCGGTAACGGCGGAAGCAGTGAAGGTGGTGGTGGTG
GCGGCGGCGGTGAGAAAGCCAAGAACAATAACATTAATGGCATGAAGAGA
GGATTTGCAGACACCGTTGTTGATTTGAAGCTAAATCTTTCAACAAAAGA
GTCAGGTGGGATTGATGTAATTCAGAAGACGAAGGGCAAAAGTGCTTCTG
CTACTGGGGCTACAGACCTTTCAAAGCCTCCGGCCAAGGCACAAGTTGTG
GGTTGGCCACCCGTTAGATCATTCAGAAAGAACATCATGGCCGTCCAAAA
GGACAATGAAGAAGGTGATAATAAGGCTAGCAGCAGCAGCAGCAGCAATG
TAGCTTTTGTTAAAGTGAGCATGGATGGTGCCCCATACTTGCGCAAGGTT
GATTTGAAGCTATACAAAAGCTACCAAGAACTCTCTGATGCCCTTGGCAA
AATGTTCAGCTCTTTCACCATTGGTAACTGTGGGTCACAAGGGATGAAGG
ATTTTATGAATGAGAGCAAACTGATTGATCTTTTGAA
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