FC869007

Overview
NameFC869007
Unique NameFC869007
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869007_ssr238 microsatellite FC869007_ssr238:238..249. BLAST: Citrus ESTs to Prunus persica proteins V1
FC869007_ssr529 microsatellite FC869007_ssr529:529..546. BLAST: Citrus ESTs to Prunus persica proteins V1
FC869007_ssr107 microsatellite FC869007_ssr107:107..118. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9443 contig Ccv1_Contig9443:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: AX22D_PHAAU (Auxin-induced protein 22D OS=Phaseolus aureus GN=AUX22D PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.481e-18
Identity = 69/168 (41.07%), Postives = 83/168 (49.40%), Query Frame = 1
Query:  160 SFIKMINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKES--GGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMF 657
            S+ K +N +ATELRLGLP                           KR  A +        S +ES   G DV ++            D   PPAKAQVVGWPP+RS+RKN +  QK  EE +         N  +VKVSM GAPYLRK+DLK+YKSY EL  AL  MF
Sbjct:    7 SYEKELNLKATELRLGLPGSDEPE---------------------KRATARSNKRSSPEASDEESISNGSDVTKE------------DNVVPPAKAQVVGWPPIRSYRKNNVQ-QKKEEESEG--------NGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMF 132          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA24_ORYSJ (Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica GN=IAA24 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.947e-17
Identity = 60/145 (41.38%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  328 KLNLSTKES-GGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIM-----AVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFS---SFTIGNCGSQGMKDFMNESKLIDLL 735
            K +L  K S    D +    G SA+     D +  PAKAQVVGWPPVR++R+N       A     + GD K          +VKVSMDGAPYLRKVDLK+ K Y+EL +AL  +F+   S T  +  S G      E K  DL+
Sbjct:   49 KRSLGAKRSLESTDSMASGTGTSAAGDEHDDDTAAPAKAQVVGWPPVRAYRRNTFHQAAAAAAATKKGGDEKQKQQQQGGGLYVKVSMDGAPYLRKVDLKMCKGYRELREALDLLFTKCFSATASDGCSDGQFAIAYEDKDGDLM 193          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: AX22E_PHAAU (Auxin-induced protein 22E OS=Phaseolus aureus GN=AUX22E PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.947e-17
Identity = 65/169 (38.46%), Postives = 82/169 (48.52%), Query Frame = 1
Query:  160 SFIKMINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLST---KESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMF 657
            S+   +N  ATELRLGLP                           KR  + +VV      S+   +ES     I      S + +   + S  PAK QVVGWPP+RSFRKN +  QK  E+GD            ++KVSM GAPYLRK+DLK+YKSY EL  AL  +F
Sbjct:    3 SYETELNLRATELRLGLPGSDEPQE--------------------KRPCSGSVVRSSNKRSSPELEESRCKSNINSDSSDSTTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQ-QKKVEQGDGTGM--------YLKVSMAGAPYLRKIDLKVYKSYPELLKALQNLF 142          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA1_ARATH (Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 49/100 (49.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  376 KTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 675
            ++  K  +     + + PPAK Q+VGWPPVRS RKN           +NK       NV++VKVSMDGAPYLRK+DLK+YK+Y EL  AL  MF  FT+G
Sbjct:   33 RSNNKRKNNDSTEESAPPPAKTQIVGWPPVRSNRKN----------NNNK-------NVSYVKVSMDGAPYLRKIDLKMYKNYPELLKALENMF-KFTVG 114          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 61/148 (41.22%), Postives = 77/148 (52.03%), Query Frame = 1
Query:  304 FADTVVDLKLNLSTKESGGIDVIQKTKG------KSASAT--------GATDLSKPPA-KAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDAL-GKMFSSFTIGNCGSQGMK 699
            F DT + L+L  S+  S        +        K ASAT        G+T    PP+ KA+VVGWPPVR+FRKN +A          K          FVKV++DGAPYLRKVDL+ Y+ Y +L  AL  K FS FTI   G++ MK
Sbjct:   20 FEDTALTLRLPGSSSSSSSSSSSSSSSSPSEPDRKRASATDDDPDNRLGSTATESPPSPKARVVGWPPVRAFRKNALAALAAASSSKAK----------FVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEMK 157          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA14_ORYSJ (Auxin-responsive protein IAA14 OS=Oryza sativa subsp. japonica GN=IAA14 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 60/164 (36.59%), Postives = 79/164 (48.17%), Query Frame = 1
Query:  319 VDLKLNLSTKESGGIDVIQKTKGKSASAT--------------GATDL---SKPPAKAQVVGWPPVRSFRKNIM--------AVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLL 735
            +D +L L    SGG D +   K +SAS+T              GA D+   + P +K QVVGWPPV S+R++          A  K    G+            +VKVSMDGAPYLRKVDL++Y  Y+EL DAL  +F  F+     S        E K  DL+
Sbjct:    6 IDAELRLGLPGSGGGDGVAAKKRRSASSTVKSEASGTACCGGAGARDVEDGASPASKVQVVGWPPVGSYRRSTFQSSSSSTAAAAKGKGGGETDQGRKNKGGGLYVKVSMDGAPYLRKVDLRMYGGYRELRDALDALFGCFSADASASAAHFAVAYEDKDGDLM 169          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA2_ARATH (Auxin-responsive protein IAA2 OS=Arabidopsis thaliana GN=IAA2 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 48/118 (40.68%), Postives = 60/118 (50.85%), Query Frame = 1
Query:  346 KESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMK 699
            KE   +  ++    +    T   + S PP K Q+VGWPPVRS RKN                     +V++VKVSMDGAPYLRK+DLK YK+Y EL  AL  MF       C  +G K
Sbjct:   28 KEEQEVSCVKSNNKRLFEETRDEEESTPPTKTQIVGWPPVRSSRKN-------------------NNSVSYVKVSMDGAPYLRKIDLKTYKNYPELLKALENMFKVMIGEYCEREGYK 126          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 63/153 (41.18%), Postives = 77/153 (50.33%), Query Frame = 1
Query:  304 FADTVVDLKLNLSTKESGGIDVIQKTKGKSAS-ATGATDLSKPPA---------KAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDAL-GKMFSSFTIGNCGSQGMKDFMNESKLID 729
            F DT + L+L  S   +   D  +K    S+S A  A D S P A         KA+VVGWPPVRSFRKN +A +                   FVKV++DGAPYLRKVDL+ Y  Y +L  AL  K FS FTI        K   +E KL+D
Sbjct:   20 FEDTALTLRLPGSLAAAAAPDPDRKRSSPSSSDAADAADNSSPLAAAADAPPAPKARVVGWPPVRSFRKNALAAK-------------------FVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTI-------RKFADDERKLVD 146          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: AX22B_PHAAU (Auxin-induced protein 22B OS=Phaseolus aureus GN=AUX22B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.705e-15
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  418 LSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMF 657
            +S PP KA++VGWPP+RS+RKN  +VQ+   +G             FVKVSMDGAPYLRKVDLK+Y  Y EL  AL  MF
Sbjct:   69 VSAPPPKAKIVGWPPIRSYRKN--SVQEGEGDG------------IFVKVSMDGAPYLRKVDLKVYGGYPELLKALETMF 134          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA31_ORYSJ (Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 54/137 (39.42%), Postives = 72/137 (52.55%), Query Frame = 1
Query:  322 DLKLNL-STKESGGIDVIQKTKGKSASATGATDLSK----PPAKAQVVGWPPVRSFRKNIM--------------AVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 675
            +L+L L  T+E           G   +  G  D +K      AKAQVVGWPPVRS+RK+ +              A   + ++ ++ A         FVKVSMDGAPYLRK+DLK+YK Y+EL +AL  MF  F+ G
Sbjct:    8 ELRLGLPGTEEEAAPPPSTPRAGSKRALAGEPDQAKIKPAAAAKAQVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGL----FVKVSMDGAPYLRKIDLKVYKGYRELREALEAMFLCFSGG 140          
The following BLAST results are available for this feature:
BLAST of FC869007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AX22D_PHAAU3.481e-1841.07Auxin-induced protein 22D OS=Phaseolus aureus GN=A... [more]
IAA24_ORYSJ2.947e-1741.38Auxin-responsive protein IAA24 OS=Oryza sativa sub... [more]
AX22E_PHAAU2.947e-1738.46Auxin-induced protein 22E OS=Phaseolus aureus GN=A... [more]
IAA1_ARATH3.849e-1749.00Auxin-responsive protein IAA1 OS=Arabidopsis thali... [more]
IAA15_ORYSJ6.565e-1741.22Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA14_ORYSJ6.565e-1736.59Auxin-responsive protein IAA14 OS=Oryza sativa sub... [more]
IAA2_ARATH7.259e-1640.68Auxin-responsive protein IAA2 OS=Arabidopsis thali... [more]
IAA1_ORYSJ2.112e-1541.18Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
AX22B_PHAAU4.705e-1555.00Auxin-induced protein 22B OS=Phaseolus aureus GN=A... [more]
IAA31_ORYSJ6.145e-1539.42Auxin-responsive protein IAA31 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC31007E06EF AbioticL1 Citrus clementina cDNA clone C31007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869007 ID=FC869007; Name=FC869007; organism=Citrus clementina; type=EST; length=737bp
GGCTCTTTCTTTGAATGCAATCAGAAAAAAAAAAACCAAAAGTACTACTC
TCGATGCCCTCTCAAAACACAAACAAACCAACCAAAAAAAAAAAACAAGA
GAGTGATAATTAATTAATTAAGAGAGGAGTTTAAGGAGTGTTTAGTGTGT
AAATTTGAAAGTTTCATTAAGATGATTAACTTCGAAGCGACGGAGCTTCG
GCTAGGGTTACCGGGCGGTAACGGCGGAAGCAGTGAAGGTGGTGGTGGTG
GCGGCGGCGGTGAGAAAGCCAAGAACAATAACATTAATGGCATGAAGAGA
GGATTTGCAGACACCGTTGTTGATTTGAAGCTAAATCTTTCAACAAAAGA
GTCAGGTGGGATTGATGTAATTCAGAAGACGAAGGGCAAAAGTGCTTCTG
CTACTGGGGCTACAGACCTTTCAAAGCCTCCGGCCAAGGCACAAGTTGTG
GGTTGGCCACCCGTTAGATCATTCAGAAAGAACATCATGGCCGTCCAAAA
GGACAATGAAGAAGGTGATAATAAGGCTAGCAGCAGCAGCAGCAGCAATG
TAGCTTTTGTTAAAGTGAGCATGGATGGTGCCCCATACTTGCGCAAGGTT
GATTTGAAGCTATACAAAAGCTACCAAGAACTCTCTGATGCCCTTGGCAA
AATGTTCAGCTCTTTCACCATTGGTAACTGTGGGTCACAAGGGATGAAGG
ATTTTATGAATGAGAGCAAACTGATTGATCTTTTGAA
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