FC869008

Overview
NameFC869008
Unique NameFC869008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_GEOSL (Porphobilinogen deaminase OS=Geobacter sulfurreducens GN=hemC PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.075e-25
Identity = 61/108 (56.48%), Postives = 77/108 (71.30%), Query Frame = 2 
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +RIGTR S LAL QA+  +++L   +P +     +++V IKT GDKIL  PLA +GGKGLF KEI+EA++  +IDIAVHSMKDVPT  PE   L C  +RED RDAFI
Sbjct:    6 LRIGTRASQLALWQANWVKSELEKRYPGME----VELVKIKTIGDKILDVPLAQVGGKGLFVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGLVCITEREDPRDAFI 109
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_GEOLS (Porphobilinogen deaminase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=hemC PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.075e-25
Identity = 61/108 (56.48%), Postives = 78/108 (72.22%), Query Frame = 2 
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +RIGTR S LAL QA+ T+++L A +P +     +++V IKT GDKIL  PLA +GGKGLF KEI+EA++  +ID+AVHSMKDVPT  PE   L    +RED RDAFI
Sbjct:    6 LRIGTRASQLALWQANWTKSELEARYPGIQ----VELVKIKTMGDKILDVPLAQVGGKGLFVKEIEEAMLRGEIDLAVHSMKDVPTEFPEGLGLVVTTKREDPRDAFI 109
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_SHIFL (Porphobilinogen deaminase OS=Shigella flexneri GN=hemC PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ECOSE (Porphobilinogen deaminase OS=Escherichia coli (strain SE11) GN=hemC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ECOLU (Porphobilinogen deaminase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=hemC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ECOLI (Porphobilinogen deaminase OS=Escherichia coli (strain K12) GN=hemC PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ECOL6 (Porphobilinogen deaminase OS=Escherichia coli O6 GN=hemC PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNTYDSLDALPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ECODH (Porphobilinogen deaminase OS=Escherichia coli (strain K12 / DH10B) GN=hemC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ECOBW (Porphobilinogen deaminase OS=Escherichia coli (strain K12 / BW2952) GN=hemC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ECO8A (Porphobilinogen deaminase OS=Escherichia coli O8 (strain IAI1) GN=hemC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIV 125
The following BLAST results are available for this feature:
BLAST of FC869008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
HEM3_GEOSL6.075e-2556.48Porphobilinogen deaminase OS=Geobacter sulfurreduc... [more]
HEM3_GEOLS6.075e-2556.48Porphobilinogen deaminase OS=Geobacter lovleyi (st... [more]
HEM3_SHIFL7.935e-2550.40Porphobilinogen deaminase OS=Shigella flexneri GN=... [more]
HEM3_ECOSE7.935e-2550.40Porphobilinogen deaminase OS=Escherichia coli (str... [more]
HEM3_ECOLU7.935e-2550.40Porphobilinogen deaminase OS=Escherichia coli O17:... [more]
HEM3_ECOLI7.935e-2550.40Porphobilinogen deaminase OS=Escherichia coli (str... [more]
HEM3_ECOL67.935e-2550.40Porphobilinogen deaminase OS=Escherichia coli O6 G... [more]
HEM3_ECODH7.935e-2550.40Porphobilinogen deaminase OS=Escherichia coli (str... [more]
HEM3_ECOBW7.935e-2550.40Porphobilinogen deaminase OS=Escherichia coli (str... [more]
HEM3_ECO8A7.935e-2550.40Porphobilinogen deaminase OS=Escherichia coli O8 (... [more]

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Properties
Property NameValue
Genbank descriptionC31007E07EF AbioticL1 Citrus clementina cDNA clone C31007E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869008 ID=FC869008; Name=FC869008; organism=Citrus clementina; type=EST; length=703bp
GGAAGCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTCT
TCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGATA
CTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAGC
AGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGCT
ATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGACT
CCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAGC
CTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGAG
GAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCATG
GCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAAT
AAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGTG
GGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCAA
ATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAGA
GAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCAT
TTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCNAGAAGCATT
GTT
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