FC869008

Overview
NameFC869008
Unique NameFC869008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ECO7I (Porphobilinogen deaminase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=hemC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDNLDALPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ECO57 (Porphobilinogen deaminase OS=Escherichia coli O157:H7 GN=hemC PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ECO55 (Porphobilinogen deaminase OS=Escherichia coli (strain 55989 / EAEC) GN=hemC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_BRUSU (Porphobilinogen deaminase OS=Brucella suis GN=hemC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 2 
Query:  320 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTVLPEGLHLSVFLEREDPRDAFI 116
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_BRUSI (Porphobilinogen deaminase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=hemC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 2 
Query:  320 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTVLPEGLHLSVFLEREDPRDAFI 116
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_BRUC2 (Porphobilinogen deaminase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=hemC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 2 
Query:  320 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTVLPEGLHLSVFLEREDPRDAFI 116
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_PELCD (Porphobilinogen deaminase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 62/108 (57.41%), Postives = 74/108 (68.52%), Query Frame = 2 
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +RIGTR S LAL QA   + +L  LHP L+    + +V I T GDKIL  PLA +GGKGLF KEI+EAL +  ID+AVHSMKDVP+ LP   ILPC   RED RDA +
Sbjct:    6 LRIGTRASRLALWQAEWVQQQLETLHPGLS----VVLVPITTKGDKILDVPLAKVGGKGLFVKEIEEALYDGSIDLAVHSMKDVPSVLPPGLILPCIPPREDPRDALV 109
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ECO81 (Porphobilinogen deaminase OS=Escherichia coli O81 (strain ED1a) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICKREDPRDAFVSNTYDSLDALPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ECO45 (Porphobilinogen deaminase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICKREDPRDAFVSNTYDSLDALPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_BRUME (Porphobilinogen deaminase OS=Brucella melitensis GN=hemC PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 2 
Query:  320 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTALPEGLHLSVFLEREDPRDAFI 116
The following BLAST results are available for this feature:
BLAST of FC869008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
HEM3_ECO7I7.935e-2550.40Porphobilinogen deaminase OS=Escherichia coli O7:K... [more]
HEM3_ECO577.935e-2550.40Porphobilinogen deaminase OS=Escherichia coli O157... [more]
HEM3_ECO557.935e-2550.40Porphobilinogen deaminase OS=Escherichia coli (str... [more]
HEM3_BRUSU7.935e-2555.36Porphobilinogen deaminase OS=Brucella suis GN=hemC... [more]
HEM3_BRUSI7.935e-2555.36Porphobilinogen deaminase OS=Brucella suis (strain... [more]
HEM3_BRUC27.935e-2555.36Porphobilinogen deaminase OS=Brucella canis (strai... [more]
HEM3_PELCD1.036e-2457.41Porphobilinogen deaminase OS=Pelobacter carbinolic... [more]
HEM3_ECO811.036e-2450.40Porphobilinogen deaminase OS=Escherichia coli O81 ... [more]
HEM3_ECO451.036e-2450.40Porphobilinogen deaminase OS=Escherichia coli O45:... [more]
HEM3_BRUME1.036e-2455.36Porphobilinogen deaminase OS=Brucella melitensis G... [more]

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Properties
Property NameValue
Genbank descriptionC31007E07EF AbioticL1 Citrus clementina cDNA clone C31007E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869008 ID=FC869008; Name=FC869008; organism=Citrus clementina; type=EST; length=703bp
GGAAGCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTCT
TCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGATA
CTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAGC
AGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGCT
ATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGACT
CCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAGC
CTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGAG
GAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCATG
GCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAAT
AAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGTG
GGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCAA
ATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAGA
GAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCAT
TTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCNAGAAGCATT
GTT
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