FC869008

Overview
NameFC869008
Unique NameFC869008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_BRUMB (Porphobilinogen deaminase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 2 
Query:  320 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTALPEGLHLSVFLEREDPRDAFI 116
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_BRUAB (Porphobilinogen deaminase OS=Brucella abortus GN=hemC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 2 
Query:  320 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTALPEGLHLSVFLEREDPRDAFI 116
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_BRUA2 (Porphobilinogen deaminase OS=Brucella abortus (strain 2308) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 2 
Query:  320 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTALPEGLHLSVFLEREDPRDAFI 116
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_BRUA1 (Porphobilinogen deaminase OS=Brucella abortus (strain S19) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 2 
Query:  320 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTALPEGLHLSVFLEREDPRDAFI 116
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_BRUO2 (Porphobilinogen deaminase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 61/108 (56.48%), Postives = 79/108 (73.15%), Query Frame = 2 
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI
Sbjct:    1 MKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTVLPEGLHLSVFLEREDPRDAFI 106
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_GEOMG (Porphobilinogen deaminase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=hemC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24
Identity = 61/108 (56.48%), Postives = 76/108 (70.37%), Query Frame = 2 
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +RIGTR S LAL QA+  + +L   +P +A    +++V IKT GDKIL  PLA +GGKGLF KEI+EA++  +IDIAVHSMKDVPT  PE   L C  +RED RDA I
Sbjct:    6 LRIGTRASQLALWQANWVKGELEKRYPGMA----VELVKIKTMGDKILDVPLAQVGGKGLFVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGLYCITEREDPRDAVI 109
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ALCBS (Porphobilinogen deaminase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=hemC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            I+RI TR SPLA+ QA   + +L +LH  L     +++V IKT GDKIL  PLA IGGKGLF KE++EA+++ + DIAVHSMKDVP  LP    LP   +RED RDAF+
Sbjct:    5 ILRIATRSSPLAIWQAEYVQQRLESLHEGLR----VELVRIKTQGDKILDTPLAKIGGKGLFVKELEEAMMDGRADIAVHSMKDVPMELPPGFALPVICEREDPRDAFV 109
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ESCF3 (Porphobilinogen deaminase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=hemC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24
Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMAKHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNKYASLDELPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_SALTY (Porphobilinogen deaminase OS=Salmonella typhimurium GN=hemC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_SALTI (Porphobilinogen deaminase OS=Salmonella typhi GN=hemC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLPAGSIV 125
The following BLAST results are available for this feature:
BLAST of FC869008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
HEM3_BRUMB1.036e-2455.36Porphobilinogen deaminase OS=Brucella melitensis b... [more]
HEM3_BRUAB1.036e-2455.36Porphobilinogen deaminase OS=Brucella abortus GN=h... [more]
HEM3_BRUA21.036e-2455.36Porphobilinogen deaminase OS=Brucella abortus (str... [more]
HEM3_BRUA11.036e-2455.36Porphobilinogen deaminase OS=Brucella abortus (str... [more]
HEM3_BRUO21.353e-2456.48Porphobilinogen deaminase OS=Brucella ovis (strain... [more]
HEM3_GEOMG1.768e-2456.48Porphobilinogen deaminase OS=Geobacter metalliredu... [more]
HEM3_ALCBS1.768e-2455.05Porphobilinogen deaminase OS=Alcanivorax borkumens... [more]
HEM3_ESCF33.938e-2449.60Porphobilinogen deaminase OS=Escherichia fergusoni... [more]
HEM3_SALTY5.143e-2449.60Porphobilinogen deaminase OS=Salmonella typhimuriu... [more]
HEM3_SALTI5.143e-2449.60Porphobilinogen deaminase OS=Salmonella typhi GN=h... [more]

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Properties
Property NameValue
Genbank descriptionC31007E07EF AbioticL1 Citrus clementina cDNA clone C31007E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869008 ID=FC869008; Name=FC869008; organism=Citrus clementina; type=EST; length=703bp
GGAAGCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTCT
TCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGATA
CTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAGC
AGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGCT
ATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGACT
CCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAGC
CTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGAG
GAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCATG
GCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAAT
AAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGTG
GGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCAA
ATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAGA
GAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCAT
TTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCNAGAAGCATT
GTT
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