FC869008

Overview
NameFC869008
Unique NameFC869008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_SALSV (Porphobilinogen deaminase OS=Salmonella schwarzengrund (strain CVM19633) GN=hemC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_SALPK (Porphobilinogen deaminase OS=Salmonella paratyphi A (strain AKU_12601) GN=hemC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_SALPC (Porphobilinogen deaminase OS=Salmonella paratyphi C (strain RKS4594) GN=hemC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_SALPA (Porphobilinogen deaminase OS=Salmonella paratyphi A GN=hemC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_SALDC (Porphobilinogen deaminase OS=Salmonella dublin (strain CT_02021853) GN=hemC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_GEOSM (Porphobilinogen deaminase OS=Geobacter sp. (strain M21) GN=hemC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 59/108 (54.63%), Postives = 75/108 (69.44%), Query Frame = 2 
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +RIGTR S LAL QA+  +++L   +P++     + +  IKT GDKIL  PLA +GGKGLF KEI+EA++  +IDIAVHSMKDVPT  PE   L C  +RED RDA I
Sbjct:    6 LRIGTRASQLALWQANWVKSELEKRYPDMT----VTLTKIKTIGDKILDVPLAQVGGKGLFVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGLYCITEREDPRDAVI 109
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_GEOBB (Porphobilinogen deaminase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=hemC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 59/108 (54.63%), Postives = 75/108 (69.44%), Query Frame = 2 
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +RIGTR S LAL QA+  +++L   +P++     + +  IKT GDKIL  PLA +GGKGLF KEI+EA++  +IDIAVHSMKDVPT  PE   L C  +RED RDA I
Sbjct:    6 LRIGTRASQLALWQANWVKSELEKRYPDMT----VTLTKIKTIGDKILDVPLAQVGGKGLFVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGLYCITEREDPRDAVI 109
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_SALAR (Porphobilinogen deaminase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=hemC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 61/125 (48.80%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            +++I TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PA SIV
Sbjct:    5 VLKIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNQYHSLDDLPAGSIV 125
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_GEOSF (Porphobilinogen deaminase OS=Geobacter sp. (strain FRC-32) GN=hemC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 2 
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +RIGTR S LAL QA+  +++L   +P +     + +V IKT GDKIL  PLA +GGKGLF KEI+EA++   IDIAVHSMKDVPT  PE   L C  +RED RDA I
Sbjct:    6 LRIGTRASQLALWQANWVKSELEQRYPGME----VSLVKIKTIGDKILDVPLAQVGGKGLFVKEIEEAMLRGDIDIAVHSMKDVPTEFPEGLGLHCITEREDPRDAVI 109
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_YERPS (Porphobilinogen deaminase OS=Yersinia pseudotuberculosis GN=hemC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 64/125 (51.20%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IIRI TR SPLAL QAH  ++ L A HP L     I++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   PE   L    +RED RDAF+          PA S+V
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVAICEREDPRDAFVSSHYAHLDDLPAGSVV 125
The following BLAST results are available for this feature:
BLAST of FC869008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
HEM3_SALSV5.143e-2449.60Porphobilinogen deaminase OS=Salmonella schwarzeng... [more]
HEM3_SALPK5.143e-2449.60Porphobilinogen deaminase OS=Salmonella paratyphi ... [more]
HEM3_SALPC5.143e-2449.60Porphobilinogen deaminase OS=Salmonella paratyphi ... [more]
HEM3_SALPA5.143e-2449.60Porphobilinogen deaminase OS=Salmonella paratyphi ... [more]
HEM3_SALDC5.143e-2449.60Porphobilinogen deaminase OS=Salmonella dublin (st... [more]
HEM3_GEOSM8.773e-2454.63Porphobilinogen deaminase OS=Geobacter sp. (strain... [more]
HEM3_GEOBB8.773e-2454.63Porphobilinogen deaminase OS=Geobacter bemidjiensi... [more]
HEM3_SALAR1.146e-2348.80Porphobilinogen deaminase OS=Salmonella arizonae (... [more]
HEM3_GEOSF1.146e-2355.56Porphobilinogen deaminase OS=Geobacter sp. (strain... [more]
HEM3_YERPS1.496e-2351.20Porphobilinogen deaminase OS=Yersinia pseudotuberc... [more]

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Properties
Property NameValue
Genbank descriptionC31007E07EF AbioticL1 Citrus clementina cDNA clone C31007E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869008 ID=FC869008; Name=FC869008; organism=Citrus clementina; type=EST; length=703bp
GGAAGCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTCT
TCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGATA
CTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAGC
AGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGCT
ATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGACT
CCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAGC
CTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGAG
GAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCATG
GCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAAT
AAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGTG
GGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCAA
ATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAGA
GAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCAT
TTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCNAGAAGCATT
GTT
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