FC869008

Overview
NameFC869008
Unique NameFC869008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM31_STRAW (Porphobilinogen deaminase 1 OS=Streptomyces avermitilis GN=hemC1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 2 
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +R+GTR S LA+AQ+ +  + +  +         +++V I T GD    + LA IGG G+F   + +AL+  ++D AVHS+KD+PT  P++  L     RED RD  +
Sbjct:    6 LRLGTRRSKLAMAQSGQVADAVRQVTGR-----PVELVEITTYGDTS-REHLAQIGGTGVFVTALRDALLRGEVDFAVHSLKDLPTAQPDELALAAVPVREDPRDVLV 107
[Close]
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_CLOBB (Porphobilinogen deaminase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=hemC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 43/106 (40.57%), Postives = 58/106 (54.72%), Query Frame = 2 
Query:  338 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            I TR S LA  Q      KL +     +++     ++I T GD+ L   L  IGGKGLF K+I+ AL+N +   AVHSMKDVP  +  +  +     RED+RD FI
Sbjct:    6 IATRKSKLAQVQTEIIMGKLKSKFNIDSKK-----LLIVTEGDRKLDVSLNKIGGKGLFVKDIELALLNKEAHAAVHSMKDVPFEVSSEFEITAITGREDIRDVFI 106
The following BLAST results are available for this feature:
BLAST of FC869008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
HEM31_STRAW6.521e-1136.11Porphobilinogen deaminase 1 OS=Streptomyces avermi... [more]
HEM3_CLOBB8.517e-1140.57Porphobilinogen deaminase OS=Clostridium botulinum... [more]

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Properties
Property NameValue
Genbank descriptionC31007E07EF AbioticL1 Citrus clementina cDNA clone C31007E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869008 ID=FC869008; Name=FC869008; organism=Citrus clementina; type=EST; length=703bp
GGAAGCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTCT
TCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGATA
CTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAGC
AGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGCT
ATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGACT
CCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAGC
CTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGAG
GAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCATG
GCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAAT
AAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGTG
GGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCAA
ATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAGA
GAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCAT
TTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCNAGAAGCATT
GTT
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